| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,288,135 – 2,288,239 |
| Length | 104 |
| Max. P | 0.887648 |
| Location | 2,288,135 – 2,288,239 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.30 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -17.79 |
| Energy contribution | -17.43 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2288135 104 - 20766785 AGAGACA--AGGA------GGGAAAAUGCUAUUUCGUCGCAGUUGUACGUAUAACGUGGAGCAAUCAACGCGACAUUAUGCAAAGGUAAAACAUUGCAUUGCA--ACCCCGCAU .......--....------(((....(((......(((((.(((((....)))))((.((....)).)))))))...((((((.(......).)))))).)))--..))).... ( -26.80) >DroGri_CAF1 69216 102 - 1 AGAGAGA--AAGAGAUAAUAAAAAAAUGUUAUUUCGCCGCAGUUGUACGUAUAAUGUGGAGCAAUCAACGCGACAUUAUGCAAAGGUAAAACAUUGCAUUGCA----------U .......--..(((((((((......)))))))))...(((((.(((.(((((((((...((.......)).)))))))))...(......)..)))))))).----------. ( -23.50) >DroWil_CAF1 81082 88 - 1 AGAGCCA--A---------AUAAUAAUGUUAUUCCGUCGCAGUUGUACCUAUAAUGUGGAGCAAUCAACGCGACAUUAUGCAAAGGUAAAACAUUGCA---------------U .......--.---------................(((((.(((((.((........)).)))))....)))))...((((((.(......).)))))---------------) ( -19.10) >DroYak_CAF1 49736 95 - 1 -----------GA------GGGAAAAUGCUUUUUCGUCGCAGUUGUACGUAUAACGUGGAGCAAUCAACGCGACAUUAUGCAAAGGUAAAACAUUGCAUUGCA--ACCCCGCAU -----------..------(((....(((......(((((.(((((....)))))((.((....)).)))))))...((((((.(......).)))))).)))--..))).... ( -26.80) >DroAna_CAF1 67892 105 - 1 AGAGACA--AAGA------G-GAAAAUGCUAUUUCGUCGCAGUUGUACGUACAACGUGGAGCAAUCAACGCGACAUUAUGCAAAGGUAAAGCAUUGCACUGCCCCUCCCCGCUU .(((...--..((------(-(....(((......(((((.(((((....)))))((.((....)).))))))).....)))..((((..((...))..))))))))....))) ( -27.80) >DroPer_CAF1 55107 110 - 1 AGCGACAGCAGGA---CACAGGAUCAUGUUGUUCCGUCGCAGUUGUACCUACAACGUGGAGCAAUCAACGCGGCAUUAUGCGAAGGUAAAACAUGGCGUUGCAU-ACCCCGAAU .(((((.((.(..---..).....((((((.....(((((.(((((....)))))((.((....)).)))))))....(((....))).)))))))))))))..-......... ( -32.20) >consensus AGAGACA__A_GA______AGGAAAAUGCUAUUUCGUCGCAGUUGUACGUAUAACGUGGAGCAAUCAACGCGACAUUAUGCAAAGGUAAAACAUUGCAUUGCA__ACCCCGCAU ...................................(((((.(((((....)))))((.((....)).)))))))....(((((.(......).)))))................ (-17.79 = -17.43 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:04 2006