Locus 3468

Sequence ID 2R_DroMel_CAF1
Location 11,649,105 – 11,649,204
Length 99
Max. P 0.986176
window5660

overview

Window 0

Location 11,649,105 – 11,649,204
Length 99
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 76.53
Mean single sequence MFE -36.35
Consensus MFE -13.18
Energy contribution -13.18
Covariance contribution 0.01
Combinations/Pair 1.33
Mean z-score -3.28
Structure conservation index 0.36
SVM decision value 2.03
SVM RNA-class probability 0.986176
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11649105 99 - 20766785
UUAAUAAGAAUA---UACGACC-UCCACUGG-GGGUUGAGUGUGAAAAUAU---UUGCACACUGCAAGUAUUUUCGGGGGUUGG--ACACUCCCU------UUUGCCUCCCCCCA
.........(((---(.(((((-(((...))-)))))).))))((((((((---((((.....))))))))))))(((((..((--.((......------..))))..))))). ( -41.10)
>DroPse_CAF1 24028 105 - 1
GUAAUAAGGUUGCCAUCCCAUUACCCAUUGGGGGGUUGAGUGUGAUGAAAUUUAUUCCAAGUUGCAAGUGUCUGGGGGUGGCAGGCACACACUCU------UUCACC-C--CCA-
(((((..((.......)).)))))......((((((.((((((..((.(((((.....))))).)).(((((((.......))))))))))))).------...)))-)--)).- ( -32.80)
>DroSec_CAF1 21548 103 - 1
UUAAUAAGAAUA---UACGACC-UCCACUGG-GGGUUGAGUGUGGAAUUAU---UUGCACACUGCAAGUGUUUUCGGGGGUUGG--ACACUCCCUCCCCCCUUUGCCAC--CCCA
.......(((.(---(((((((-(((...))-))))).((((((.((....---)).))))))....)))).)))(((((..((--......))..)))))........--.... ( -36.80)
>DroSim_CAF1 22477 103 - 1
UUAAUAAGAAUA---UACGACC-UCCACUGG-GGGUUGAGUGUGGAAAUAU---UUGCACACUGCAAGUGUUUUCGGGGGUUGG--ACACUCCCUCCCUCCUUUGCCUC--CCCA
.........(((---(.(((((-(((...))-)))))).))))((((((((---((((.....))))))))))))((((((.((--(...........)))...)))))--)... ( -37.00)
>DroEre_CAF1 21466 95 - 1
UUAACAAGGUUA---UACGACC-UCCACUGG-GGGUUGAGUGCUGGAAUAU---UUGCACAUUGCAAGUGUUUUCGGGGGUUGG--ACACUCCCU------UAACC--C--CCAA
......(((((.---...))))-)....(((-(((((((.....(((((((---((((.....))))))))))).((((((...--..)))))))------)))))--)--))). ( -38.30)
>DroYak_CAF1 22023 94 - 1
UUAACAUGGUUA---UACGACC-UCCACUGG-GGGUUGAGUGUCGGAAUAU---UUGCACAUUGCAAGUCUUUUCGGGGGUUGG--ACACUCCCU------UUAGC--C--CCA-
............---..(((((-(((...))-)))))).....(((((.((---((((.....))))))..)))))((((((((--(.......)------)))))--)--)).- ( -32.10)
>consensus
UUAAUAAGAAUA___UACGACC_UCCACUGG_GGGUUGAGUGUGGAAAUAU___UUGCACACUGCAAGUGUUUUCGGGGGUUGG__ACACUCCCU______UUUGCC_C__CCAA
.................(((((..((...))..)))))......(((((((...((((.....))))))))))).((((((.......))))))..................... (-13.18 = -13.18 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:18 2006