Locus 3458

Sequence ID 2R_DroMel_CAF1
Location 11,617,551 – 11,617,650
Length 99
Max. P 0.974198
window5642

overview

Window 2

Location 11,617,551 – 11,617,650
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 98.79
Mean single sequence MFE -30.66
Consensus MFE -30.20
Energy contribution -30.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.98
SVM decision value 1.73
SVM RNA-class probability 0.974198
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11617551 99 + 20766785
AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU
......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. ( -30.20)
>DroSec_CAF1 15403 99 + 1
AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU
......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. ( -30.20)
>DroSim_CAF1 15694 99 + 1
AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU
......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. ( -30.20)
>DroEre_CAF1 15778 99 + 1
AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAAUGGAUGAACAUUGUUCAUCGUCAUUUUGCAU
......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. ( -30.20)
>DroYak_CAF1 16756 99 + 1
UAUAGCAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU
..((((......((((((((.(((........))).)))))))).......))))..(..((((((....(((((((...))))))).))))))..).. ( -32.52)
>consensus
AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU
......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. (-30.20 = -30.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:02 2006