| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,613,715 – 11,613,806 |
| Length | 91 |
| Max. P | 0.626391 |
| Location | 11,613,715 – 11,613,806 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 84.06 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -17.88 |
| Energy contribution | -18.88 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11613715 91 - 20766785 CCUGAACAGCCGGUAAGCCGCUUUGGCGUUGCCAGACCAUUGGGUUCGAAAUUUCGAACUUAGCUGCA-UGCUAUUUUACGUUAGCAUGUAA ......((((.((((((((.....))).))))).......(((((((((....)))))))))))))((-(((((........)))))))... ( -32.60) >DroSec_CAF1 11621 92 - 1 CCUGAACAGCCGGUAAGCCGCUUUAACGUUGCCAGAUCAAUGGGUUCGAAAUUUCGAACUCAGCUGCAAUGCCACUUUACAUAAACAUGUAA .......(((.((....)))))....((((((.((.....(((((((((....))))))))).)))))))).....((((((....)))))) ( -24.60) >DroSim_CAF1 11668 92 - 1 CCUGAACAGCCGGUAAGCCGCUUUGGCGUUGCCAGAUCAAUGGGUUCGAAAUUUCGAACAAAGCUGCAAUGACAUUUUACAUUAGCAUGUAA ......((((.((((((((.....))).)))))..........((((((....))))))...))))..........((((((....)))))) ( -23.60) >DroEre_CAF1 11859 90 - 1 CCUGAACGGCCGGUAAGUUUACUUGGCGUUGCCAGACCAAUGGGUUGG--CUUUCGAACUUAGCUUCAAGGCAAUUUUACAUUACAAUGAAA ..((((.((((((((((((.....))).))))).((((....))))))--))))))......(((....))).................... ( -19.50) >consensus CCUGAACAGCCGGUAAGCCGCUUUGGCGUUGCCAGACCAAUGGGUUCGAAAUUUCGAACUUAGCUGCAAUGCCAUUUUACAUUAGCAUGUAA ......((((.((((((((.....))).))))).......((((((((......))))))))))))..........((((((....)))))) (-17.88 = -18.88 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:01 2006