Locus 3456

Sequence ID 2R_DroMel_CAF1
Location 11,611,300 – 11,611,397
Length 97
Max. P 0.670924
window5640

overview

Window 0

Location 11,611,300 – 11,611,397
Length 97
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 83.74
Mean single sequence MFE -29.13
Consensus MFE -20.79
Energy contribution -19.93
Covariance contribution -0.86
Combinations/Pair 1.21
Mean z-score -2.24
Structure conservation index 0.71
SVM decision value 0.29
SVM RNA-class probability 0.670924
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11611300 97 - 20766785
CCCGGUUUCCCUUCGCCACCAGUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCCAACGAUGAGGGCGGUCCCGGU----
.((((..(((((((((.....((((((..((..((((((((.(((.....))).))))))))..))..)))))).....).)))))).))..)))).---- ( -33.00)
>DroPse_CAF1 11403 90 - 1
-CC-GCUACUCCUCUCUCAUAUUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGUUGGGCUAACGAUGAGGGCGGGU---------
-..-.....(((.(((((((..(((((((((..((((((((.(((.....))).))))))))..)).....)))))))..))))))).))).--------- ( -24.80)
>DroSec_CAF1 9207 100 - 1
-CCGGUUUCCCUUCGCCAUUAGUUGGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCCAACGAUGAGGGCGGUCCCGGUUUCC
-((((..(((((((((.....((..((..((..((((((((.(((.....))).))))))))..))..))..)).....).)))))).))..))))..... ( -32.60)
>DroSim_CAF1 9259 100 - 1
-CCGGUUUCCCUUCGCCACCAGUUGGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCCAACGAUGAGGGCGGUCCCGGUUUCC
-((((..(((((((((.....((..((..((..((((((((.(((.....))).))))))))..))..))..)).....).)))))).))..))))..... ( -32.60)
>DroEre_CAF1 9380 89 - 1
---------CCCUGGCCACCAGUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCUAACGAUGAGGGCGGUC---GUUUCC
---------....((((.((.((((((..((..((((((((.(((.....))).))))))))..))..))))))(....).....)).))))---...... ( -25.90)
>DroYak_CAF1 10457 89 - 1
---------CCCUGGCCACCAGUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCUAACGAUGAGGGCGGUC---GUUUCC
---------....((((.((.((((((..((..((((((((.(((.....))).))))))))..))..))))))(....).....)).))))---...... ( -25.90)
>consensus
_CC_GUUUCCCCUCGCCACCAGUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCCAACGAUGAGGGCGGUC___GUUUCC
..............(((......((((..((..((((((((.(((.....))).))))))))..))..))))((((........))))))).......... (-20.79 = -19.93 +  -0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:00 2006