Locus 3455

Sequence ID 2R_DroMel_CAF1
Location 11,610,632 – 11,610,727
Length 95
Max. P 0.750460
window5639

overview

Window 9

Location 11,610,632 – 11,610,727
Length 95
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 79.01
Mean single sequence MFE -25.05
Consensus MFE -16.97
Energy contribution -18.22
Covariance contribution 1.25
Combinations/Pair 1.16
Mean z-score -1.48
Structure conservation index 0.68
SVM decision value 0.47
SVM RNA-class probability 0.750460
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11610632 95 + 20766785
GCACUCCGGCCGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCACGGAGAAGCGCAAAGCAAAAAGAAUUGGUACUAAGAAAAACAA--G--GCGAC
((.(((((...((((((...((((((....))))))...)))))).)))))..((.....))...........................--.--))... ( -29.30)
>DroPse_CAF1 10943 80 + 1
CUCCUUUGCC--------CCAUGUAUUUCUGUACUUU-ACGGGCCAUGAAGAAGC--AGUCCAAAAAGAGC---AACAAAAAAGUGUAA-----GGGAA
.((((((((.--------...........(((.((((-..((((..((......)--)))))..)))).))---)((......))))))-----)))). ( -15.60)
>DroSec_CAF1 8526 97 + 1
GUACUGCGGCCGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCACAGAGAAGCGAAAAGCAAAAAGAAUUGGUACUAAAGAAAACAA--GGGGGGAG
(((((......((((((...((((((....))))))...))))))........((.....))..........)))))............--........ ( -23.70)
>DroSim_CAF1 8590 99 + 1
GUACUCCGGCCGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCACAGAGAAGCGAAAAGCAAAAAGAUUUGGUACUAAACAAAACAAGAGGGGGGAG
...((((..((((((((...((((((....))))))...))))))........((.....)).....(.((((........)))).)....))..)))) ( -28.10)
>DroEre_CAF1 8572 94 + 1
GUACUCUGGCUGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCAUGGAGAAGCGCAAAGCAAAAAGAAUAGCUGCCAAAGAAAACAA--G--GGGC-
...((.(((((((((((...((((((....))))))...))))))).......((.....)).............)))).)).......--.--....- ( -26.60)
>DroYak_CAF1 9624 95 + 1
GUACUCCGGCUGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCAUGGAGAAGCGCAAAGCAAAAAGAAUAGCGACCAACGAAAACAA--G--GGGAG
...((((.(((((((((...((((((....))))))...))))))........((.....)).........)))..((...........--)--))))) ( -27.00)
>consensus
GUACUCCGGCCGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCACGGAGAAGCGCAAAGCAAAAAGAAUUGGUACUAAAGAAAACAA__G__GGGAG
...(((((...((((((...((((((....))))))...)))))).)))))..((.....))..................................... (-16.97 = -18.22 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:59 2006