| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,610,128 – 11,610,222 |
| Length | 94 |
| Max. P | 0.544076 |
| Location | 11,610,128 – 11,610,222 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.01 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -12.33 |
| Energy contribution | -12.22 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11610128 94 - 20766785 -------CAGCAGCAACAACAACUGUUGCAACUCCAACGCCGCCACCAUUUGGCCAAAAUGGCGGAUGCCCUGCCUGUCCGUCGCGCCCCGUAUCCCC-UUU -------..((.((((((.....)))))).........((.((((.....))))......(((((((((...))..)))))))))))...........-... ( -25.30) >DroSec_CAF1 8018 88 - 1 -------C------AACAACAACUGUUGCAACUCCAACGCCGCCACCAUUUGGCCAAAAUGGCGGAUGCCCUGCCUGUGCGUCCCGCUCCCCUUCCCC-UUC -------(------((((.....)))))..........(((((((.....))))......)))((((((.(.....).))))))..............-... ( -19.20) >DroSim_CAF1 8102 94 - 1 -------CAGCAACAACAACAACUGUUGCAACUCCAACGCCGCCACCAUUUGGCCAAAAUGGCGGAUGCCCUGCCUGUGCGUCCCGCUCCCUUUCCCC-UUU -------..((((((........)))))).........(((((((.....))))......)))((((((.(.....).))))))..............-... ( -24.10) >DroEre_CAF1 8094 84 - 1 ---------------ACAACAACUGCUGCAACUCCAACGCCGCCACCAUUUGGCCAAAAUGGCGGAUGCCCUGCCUUACCGCCCCGCCAUGC--CCCU-CUU ---------------............((............((((.....))))....(((((((..((...........)).)))))))))--....-... ( -17.40) >DroYak_CAF1 9122 100 - 1 ACAGCAACAACAACAGCAACAACUGUUGCAACUCCAACGCCGCCACCAUUUGGCCAAAAUGGCGAAUGCCCUGCCUUACCGCCCCGCCACGC--CCCACCUU ...((..........(((((....)))))............((((.....)))).....(((((...((...........))..))))).))--........ ( -19.50) >DroPer_CAF1 10412 87 - 1 -------CAGCUCCAGCUCCAAC---UGCAACUCCAACGCCGCCGCCAUUUGGCCAAUAUGGCGGCUGUUCUGCCCU---GCCCUGUCCUAC--UCCACCCG -------.(((....))).....---.(((....((..((.((((((((.........)))))))).))..))...)---))..........--........ ( -19.40) >consensus _______CAGCA_CAACAACAACUGUUGCAACUCCAACGCCGCCACCAUUUGGCCAAAAUGGCGGAUGCCCUGCCUGUCCGCCCCGCCCCGC__CCCC_CUU ...........................((............((((.....))))......(((((.....)))))..........))............... (-12.33 = -12.22 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:58 2006