| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,591,015 – 11,591,128 |
| Length | 113 |
| Max. P | 0.694871 |
| Location | 11,591,015 – 11,591,128 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.80 |
| Mean single sequence MFE | -32.13 |
| Consensus MFE | -31.37 |
| Energy contribution | -31.37 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.694871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11591015 113 + 20766785 GCUGGCGCCAACGAUGACUGCGGCAUGUCA---GAGGAUAACAGAAACAUGUCAUCCACACACACA--CAC--UAAGACACACCCAGUGGGUCACAUCCCGACACCGCCAUCGAGGUGAA .....((((..(((((...((((..((((.---..((((.(((......))).)))).........--...--...(((.(((...))).))).......))))))))))))).)))).. ( -32.40) >DroSec_CAF1 24564 120 + 1 GCUGGCGCCAACGAUGACUGCGGCAUGUCAGCAGCGGAGAACAGAAACAUGUCAUCCACACACACACACACAAUUACACACACCCAGUGGGUCACAUCCCGACACCGCCAUCGAGGUGAA .....((((..(((((...((((..((((....(.(((..(((......)))..))).).............................(((......)))))))))))))))).)))).. ( -32.00) >DroSim_CAF1 27831 115 + 1 GCUGGCGCCAACGAUGACUGCGGCAUGUCA---GCGGAGAACAGAAACAUGUCAUCCACACACACACACAC--UAACACACACCCAGUGGGUCACAUCCCGACACCGCCAUCGAGGUGAA .....((((..(((((...((((..((((.---(.(((..(((......)))..))).)............--...............(((......)))))))))))))))).)))).. ( -32.00) >consensus GCUGGCGCCAACGAUGACUGCGGCAUGUCA___GCGGAGAACAGAAACAUGUCAUCCACACACACACACAC__UAACACACACCCAGUGGGUCACAUCCCGACACCGCCAUCGAGGUGAA .....((((..(((((...((((..((((......(((..(((......)))..)))...............................(((......)))))))))))))))).)))).. (-31.37 = -31.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:40 2006