Locus 343

Sequence ID 2R_DroMel_CAF1
Location 2,257,749 – 2,257,850
Length 101
Max. P 0.527791
window687

overview

Window 7

Location 2,257,749 – 2,257,850
Length 101
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.72
Mean single sequence MFE -17.75
Consensus MFE -12.32
Energy contribution -12.27
Covariance contribution -0.06
Combinations/Pair 1.12
Mean z-score -1.08
Structure conservation index 0.69
SVM decision value -0.01
SVM RNA-class probability 0.527791
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2257749 101 + 20766785
--UACUUACCUUCUAGA-GCGACCUGCACAAUCACAAAUCAU--GUUUAGGCAAAUUGUGCAAUGCAAUGAAU-CGCAUGAAAGUUCAUAGAACUUUAAGCCUAAAA
--..((((..(((((((-((....((((((((..........--..........))))))))((((.......-.))))....)))).)))))...))))....... ( -19.55)
>DroPse_CAF1 25921 98 + 1
ACU----ACCUUUUAGAAGCGACCUGCACAAUCACAAAUCGUCAGUUAACUGAAAUUGUGUAAU-----GAAUCCGCACCGAAGUUCAUAGAACUUGUAGCAUAGAU
.((----((.........(((.....((....(((((....((((....))))..)))))...)-----)....)))....((((((...))))))))))....... ( -18.30)
>DroEre_CAF1 24621 97 + 1
--U----ACCUUCUAGA-GCGACCUGCACAAUCACAAAUCAU--GUUAAUGCAUAUUGUGCAAUGAAGUGAAU-AGCAUGAAAGUUCAUAGAACUUUAAGCAUAAAA
--.----.(((((.((.-.....))(((((((........((--((....)))))))))))...)))).)...-.((...(((((((...)))))))..))...... ( -17.50)
>DroYak_CAF1 20788 97 + 1
--U----ACCUUCUAGA-GGGACCUGCACAAUCACAAAUCAU--UUUAAUGCAAAUUGUGCAAUGGAAUAAUU-CGCAUGAAAGUUCAUAGAACUUUAGGCAUAAAA
--.----.((((....)-))).((((((((((..........--..........))))))))..)).......-.((...(((((((...)))))))..))...... ( -19.95)
>DroAna_CAF1 36090 93 + 1
---ACUUACCUUCUAGA-GCGACCUGCACAAUCACAGAUCAU--GUUAACUAUAAUUGUGUAA-----CGAAU-CGUAUUAAAGUUCAUAGAACUUUUAGCAUA--A
---.......(((((((-((....((((((((.(.((.....--.....)).).))))))))(-----((...-)))......)))).)))))...........--. ( -12.90)
>DroPer_CAF1 26546 98 + 1
ACU----ACCUUUUAGAAGCGACCUGCACAAUCACAAAUCGUCAGUUAACUGAAAUUGUGUAAU-----GAAUCCGCACCGAAGUUCAUAGAACUUGUAGCAUAGAU
.((----((.........(((.....((....(((((....((((....))))..)))))...)-----)....)))....((((((...))))))))))....... ( -18.30)
>consensus
__U____ACCUUCUAGA_GCGACCUGCACAAUCACAAAUCAU__GUUAACGCAAAUUGUGCAAU____UGAAU_CGCAUGAAAGUUCAUAGAACUUUAAGCAUAAAA
........................((((((((......................)))))))).............((...(((((((...)))))))..))...... (-12.32 = -12.27 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:00 2006