Locus 3429

Sequence ID 2R_DroMel_CAF1
Location 11,584,063 – 11,584,173
Length 110
Max. P 0.884276
window5597

overview

Window 7

Location 11,584,063 – 11,584,173
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.21
Mean single sequence MFE -29.60
Consensus MFE -25.47
Energy contribution -25.52
Covariance contribution 0.05
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.86
SVM decision value 0.93
SVM RNA-class probability 0.884276
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11584063 110 + 20766785
------AUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUG---CUGCACUUCUGCC-GUUGGUCCU
------.......(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).)))))............(((.(---(.(((....))).-)).)))... ( -28.70)
>DroSec_CAF1 17676 114 + 1
------AUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUGCUGCUGCACUUCUGCCUGUUGGUCCU
------..((((.(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....(((........)))...))))....(((....)))... ( -29.60)
>DroSim_CAF1 18449 114 + 1
------AUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUGCUGCUGCACUUCUGCCUGUUGGUCCU
------..((((.(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....(((........)))...))))....(((....)))... ( -29.60)
>DroEre_CAF1 17900 115 + 1
ACUCCCAC-UGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUG---CUGCANNNNNNNN-NNNNNNNNN
......((-(...(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....))).........---.............-......... ( -25.90)
>DroYak_CAF1 18370 116 + 1
ACUGGCAUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUG---CUGCACUUCUGCC-GUUGGUCCU
...((((.((((.(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....(((........)---))))))...))))-......... ( -34.20)
>consensus
______AUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUG___CUGCACUUCUGCC_GUUGGUCCU
........((((.(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....((.......))......))))................. (-25.47 = -25.52 +   0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:18 2006