Locus 3426

Sequence ID 2R_DroMel_CAF1
Location 11,581,232 – 11,581,322
Length 90
Max. P 0.998779
window5593

overview

Window 3

Location 11,581,232 – 11,581,322
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 98.67
Mean single sequence MFE -22.38
Consensus MFE -21.70
Energy contribution -21.90
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.27
Structure conservation index 0.97
SVM decision value 3.22
SVM RNA-class probability 0.998779
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11581232 90 - 20766785
AGCAACAUCUGAGAACAACAGUGCCCCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG
.((.......((((((....((((...(((....)))..)))).((((((((.....))))))))........))))))....))..... ( -22.80)
>DroSec_CAF1 14977 90 - 1
UGCAACAUCUGAGAACAACAGUGCCGCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG
(((.......((((((....((((.(.(((....)))).)))).((((((((.....))))))))........))))))....))).... ( -24.50)
>DroSim_CAF1 15775 90 - 1
AGCAACAUCUGAGAACAACAGUGCCCCACAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG
.((.......((((((....((((....((....))...)))).((((((((.....))))))))........))))))....))..... ( -19.00)
>DroEre_CAF1 15202 90 - 1
AGCAACAUCUGAGAACAACAGUGCCCCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG
.((.......((((((....((((...(((....)))..)))).((((((((.....))))))))........))))))....))..... ( -22.80)
>DroYak_CAF1 15531 90 - 1
AGCAACAUCUGAGAACAACAGUGCCCCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG
.((.......((((((....((((...(((....)))..)))).((((((((.....))))))))........))))))....))..... ( -22.80)
>consensus
AGCAACAUCUGAGAACAACAGUGCCCCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG
.((.......((((((....((((...(((....)))..)))).((((((((.....))))))))........))))))....))..... (-21.70 = -21.90 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:14 2006