Locus 3421

Sequence ID 2R_DroMel_CAF1
Location 11,573,584 – 11,573,683
Length 99
Max. P 0.886096
window5581

overview

Window 1

Location 11,573,584 – 11,573,683
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 95.76
Mean single sequence MFE -23.60
Consensus MFE -20.84
Energy contribution -20.68
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.88
SVM decision value 0.94
SVM RNA-class probability 0.886096
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11573584 99 + 20766785
GCACUCAACAACCAGAUCAGACCCUGAUCCACACCCACGUCCAUGUCCAUCAGACUCAGCCAAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC
((((((..........((.((..(((((..(((..........)))..)))))..)).(((...)))))((((((((.....))).))))).))).))) ( -21.20)
>DroSec_CAF1 10068 99 + 1
GCACUCAACAACCAGAUCAGACCCUGAUCCACACCCACGUCCAUGUCCAUCAGACUCAGCCGAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC
((((((........((((((...))))))..(.((..((.(...(((.....)))...).))..)).).((((((((.....))).))))).))).))) ( -22.00)
>DroSim_CAF1 10349 99 + 1
GCACUCAACAACCAGAUCAGACCCUGAUCCACACCCACGUCCAUGUCCAUCAGACUCAGCCAAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC
((((((..........((.((..(((((..(((..........)))..)))))..)).(((...)))))((((((((.....))).))))).))).))) ( -21.20)
>DroEre_CAF1 10326 99 + 1
GCACUCAGCAGCCAGAUCAGACCCUGAUCCACACCCACGUCGGUGUCCAUCAGACUCAGCCAAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC
((((((.((((((......((..(((((..(((((......)))))..)))))..)).(((...)))..)))(((((.....))))))))..))).))) ( -29.10)
>DroYak_CAF1 10460 99 + 1
GUACUCAACAGCCAGAUCAGACCCUGAUCCACACCCACGACGGUGUCCAUCAGACUCAGCCAAGAGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC
..((((..........((.((..(((((..(((((......)))))..)))))..)).((.....))))((((((((.....))).))))).))))... ( -24.50)
>consensus
GCACUCAACAACCAGAUCAGACCCUGAUCCACACCCACGUCCAUGUCCAUCAGACUCAGCCAAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC
((((((..........((.((..(((((..(((..........)))..)))))..)).((.....))))((((((((.....))).))))).))).))) (-20.84 = -20.68 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:03 2006