Locus 3418

Sequence ID 2R_DroMel_CAF1
Location 11,563,260 – 11,563,362
Length 102
Max. P 0.596754
window5575

overview

Window 5

Location 11,563,260 – 11,563,362
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 84.08
Mean single sequence MFE -24.78
Consensus MFE -16.58
Energy contribution -16.52
Covariance contribution -0.06
Combinations/Pair 1.19
Mean z-score -1.65
Structure conservation index 0.67
SVM decision value 0.13
SVM RNA-class probability 0.596754
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11563260 102 - 20766785
AUAGUAGCUAAAACAGAUUAGUGUACAUGAAGUAACUUUCCUUUAUUAAGGAUGGUUUUUGUAUGCUCACUAGGAAUCCUUGAGGGAGCGCACUAUUUCUUG
(((((.(((........((((((..((((....((((.(((((....))))).))))....))))..))))))...(((....))))))..)))))...... ( -26.30)
>DroSim_CAF1 61 99 - 1
AUAGUAGCUGAAACAAAUUAGUAUACAUGAAUGUAC--UCCUUUAUUAAGGAUUGUU-UUGUAUGCUCACUAGGAAUCCUUUAGGGAGCGCACUAUUUCUUG
(((((.((.(((((((....(((((......)))))--(((((....))))))))))-))....((((.(((((.....))))).)))))))))))...... ( -24.30)
>DroEre_CAF1 79 99 - 1
AUAGUAGCUAAAACAGAUUGGUAUACAUGAAUCACC--UCAUCCAUUGAGGAUUUCU-UUGUAUGCUUACUAGGAAUCCUUUAGGGAGCGCACUAUUUGCUG
(((((.((.......((((.((....)).))))...--...(((...((((((((((-..(((....))).))))))))))...)))))..)))))...... ( -26.30)
>DroYak_CAF1 81 99 - 1
GUAGUAGCUAAAACAGAUUGGUACACAUGGAUGAAC--UCUUGAAUUGAGGAUUUGC-UUGUAAGCUUACUAGGAAUCCUUUAGGGAGCGCACUAUUUGUUG
......(((((......)))))(((.((((.((..(--((((.....((((((((.(-(.(((....))).))))))))))..)))))..)))))).))).. ( -22.20)
>consensus
AUAGUAGCUAAAACAGAUUAGUAUACAUGAAUGAAC__UCCUUUAUUAAGGAUUGUU_UUGUAUGCUCACUAGGAAUCCUUUAGGGAGCGCACUAUUUCUUG
(((((.(((........((((((..((((.........(((((....))))).........))))..))))))...(((....))))))..)))))...... (-16.58 = -16.52 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:57 2006