| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,559,338 – 11,559,440 |
| Length | 102 |
| Max. P | 0.552815 |
| Location | 11,559,338 – 11,559,440 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.24 |
| Mean single sequence MFE | -31.68 |
| Consensus MFE | -16.58 |
| Energy contribution | -18.00 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11559338 102 + 20766785 ACGCUUCCGAUGGAACGGAGGAGUACCAGCGCAAGCAACUGGCCCAGGAUAUGAAGCGCAUCAUGUCAAAUUCAAAUGCGCACUCCAGUCACA------AGAAGGCA---G ..(((((((......))))(((((....(((((.....(((...)))(((((((......))))))).........)))))))))).......------....))).---. ( -29.50) >DroVir_CAF1 1478 108 + 1 AUGCCUCCGACGGUGCUGAGGAUUAUCAACGCAAGCAGCUCGCCCAGGACAUGAAACGCAUCAUGUCCAAUACACACACGCACACCACACACACCCAGAAGCAGGGU---C .(((...(((.(.((((..(.........)...)))).))))....((((((((......))))))))...........)))..........((((.......))))---. ( -26.60) >DroSim_CAF1 1526 102 + 1 ACGCCUCCGAUGGAACGGAGGAGUACCAGCGCAAGCAACUGGCCCAGGACAUGAAGCGCAUCAUGUCAAAUUCAAAUGCGCACUCUAGUCACA------AGAAGGCU---G ((.((((((......)))))).))....(((((.....(((...)))(((((((......))))))).........)))))....(((((...------....))))---) ( -32.40) >DroYak_CAF1 1530 102 + 1 ACGCCUCUGAUGGAACGGAGGAGUAUCAGCGCAAGCAACUGGCCCAGGACAUGAAGCGCAUCAUGUCCAAUUCGAAUACGCACUCCAGUCACA------AGAAGGCA---G ..((((((..(((...((((..(((((.((....))..........((((((((......)))))))).....).))))...))))..)))..------)).)))).---. ( -37.30) >DroMoj_CAF1 1492 108 + 1 AUGCCAACGACGGCGCUGAGGAUUAUCAACGCAAGCAGCUGGCCCAGGACAUGAAGCGCAUCAUGUCCAAUACACACACGCACA---CACACGCGCAGAAAAAAGUUAACC ..((((.(....(((.(((......))).))).....).))))...((((((((......))))))))..........(((...---.....)))................ ( -27.70) >DroAna_CAF1 1485 102 + 1 AUGCAUCGGAUGGAACGGAGGAGUACCAGCGCAAGCAGCUGGCCCAGGACAUGCGGCGCAUCAUGUCCAAUUCCAACGACCACUCCAGCCACA------AGAAGGCG---G .......((((((..((..(((((.(((((.......)))))....(((((((........))))))).)))))..)).))).))).(((...------....))).---. ( -36.60) >consensus ACGCCUCCGAUGGAACGGAGGAGUACCAGCGCAAGCAACUGGCCCAGGACAUGAAGCGCAUCAUGUCCAAUUCAAACACGCACUCCAGUCACA______AGAAGGCU___G ..((((.....((..(((.((....)).((....))..)))..)).((((((((......))))))))..................................))))..... (-16.58 = -18.00 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:56 2006