| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,548,580 – 11,548,694 |
| Length | 114 |
| Max. P | 0.937051 |
| Location | 11,548,580 – 11,548,694 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.61 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -13.94 |
| Energy contribution | -17.02 |
| Covariance contribution | 3.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11548580 114 + 20766785 AAA-AAACGAAUUCUCCAUGUCGUUGAAAAGUUGUCAAUUAGUUU-----AUAUUGCUAGUCGCGCAACUUUUAAAUGCAAUUGGAUUGAAUUUAUUCGCUAAUUGCUCGAAACUCAACA ...-..................((((((((((((((.((((((..-----.....)))))).).)))))))).....((((((((...(((....))).)))))))).......))))). ( -25.40) >DroSec_CAF1 8764 114 + 1 AAA-AAACGAAUGCUCCAUGUCGUUCAAAAGUUGUCAAUUAGUUU-----AUAUUGCUAGUCGCGCAACUUUUGAAUGCAAUUGGUUUGAAUUUAUUCGCUAAUUGCUCGAAACUCAACA ...-...(((............((((((((((((((.((((((..-----.....)))))).).)))))))))))))(((((((((..(((....))))))))))))))).......... ( -31.30) >DroSim_CAF1 8818 115 + 1 AAAAAAACGAAUGCUCCAUGUCGUUCAAAAGUUGUCAAUUAGUUU-----AUAUUGCUAGUCGCGCAACUUUUGAAUGCAAUUGGAUUGAAUUUAUUCGCUAAUUGCUCGAAACUCAACA .......(((............((((((((((((((.((((((..-----.....)))))).).)))))))))))))((((((((...(((....))).))))))))))).......... ( -30.50) >DroEre_CAF1 8859 96 + 1 AAU-AGACACAU------------------GUUGUCAAUUAGUUU-----AUAUUUCCAGUCGCGCAACUAUUGAAGUGAAUUGGCUGCAUUUUAUUUGCUAAUUGCCUAAAUCCCAACU ...-.((((...------------------..))))(((((((..-----(((....((((((....(((.....)))....)))))).....)))..)))))))............... ( -17.10) >DroYak_CAF1 8877 117 + 1 AAU-AAACGAAUGCUUCAUGUCGUUCAAAAGUUGUCAAUUAGUUUACCAUAUAUUGCUAGUCGCUCAGCUUUUGAAGUGAAUUGGAUUCAUUUCAUUCGCUAGUUGCUUAGUU--CAAUA ...-....((((((..(.......((((((((((.(.((((((............)))))).)..))))))))))(((((((.(((.....)))))))))).)..))...)))--).... ( -25.20) >consensus AAA_AAACGAAUGCUCCAUGUCGUUCAAAAGUUGUCAAUUAGUUU_____AUAUUGCUAGUCGCGCAACUUUUGAAUGCAAUUGGAUUGAAUUUAUUCGCUAAUUGCUCGAAACUCAACA ......................((((((((((((((.((((((............)))))).).)))))))))))))((((((((..............))))))))............. (-13.94 = -17.02 + 3.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:50 2006