Locus 3410

Sequence ID 2R_DroMel_CAF1
Location 11,544,530 – 11,544,641
Length 111
Max. P 0.543008
window5566

overview

Window 6

Location 11,544,530 – 11,544,641
Length 111
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 85.51
Mean single sequence MFE -38.22
Consensus MFE -29.23
Energy contribution -30.47
Covariance contribution 1.25
Combinations/Pair 1.10
Mean z-score -1.44
Structure conservation index 0.76
SVM decision value 0.02
SVM RNA-class probability 0.543008
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11544530 111 + 20766785
-GGGUUCAGUGGGCCGGUGAUGGUGGUGGUGGUGAUGCUGCUAUCGCUGUUGCAGCUACUGCUGUUCUAUGGGCUAU-----CCUUGUUGGGCUAUCGCUGACAUAUAUCUUUGCCU--
-((((((((((((((.(((((((((((((..(.....)..)))))))))))(((((....)))))...)).)))).(-----((.....)))....))))))...........))))-- ( -39.90)
>DroSec_CAF1 4641 111 + 1
-GGGUUCAGUGGGCCGGUGAUGGCGGUGAUGGUGAUGCUGCUAUCGCUGUUGCAGCUACUGCUGUUCUAUGGGCUAU-----CCUUGCUGGGCUAUCGCUGACAUAUAUCUUUGCCU--
-(((((((((((.((((((((((((((((((((......)))))))))...(((((....))))).......)))))-----)...))))).)...))))))...........))))-- ( -40.70)
>DroSim_CAF1 4651 111 + 1
-GGGUUCAGUGGGCCGGUGAUGGUGGUGAUGGUGAUGCUGCUAUCGCUGUUGCAGCUACUGCUGUUCUAUGGGCUAU-----CCUUGCUGGGCUAUCGCUGACAUAUAUCUUUGCCU--
-(((((((((((.((((..(.((((((((((((......)))))).((((.(((((....)))))...)))))))))-----).)..)))).)...))))))...........))))-- ( -39.50)
>DroYak_CAF1 4727 102 + 1
GGGAUUCAGUGGGCCGGUGAUGG------------UGGUGAUGCUGCUGUUGCAG---CUGCUGUUCUAUGGGCUAUGGGCUCCUUGCUGG--UAUCGCUGACAUAUAUCUUUGCCUUU
(((((((((((((((((..(.((------------.(.(.(((((((....))))---).(((........))).)).).).)))..))))--).))))))).....)))))....... ( -32.80)
>consensus
_GGGUUCAGUGGGCCGGUGAUGGUGGUGAUGGUGAUGCUGCUAUCGCUGUUGCAGCUACUGCUGUUCUAUGGGCUAU_____CCUUGCUGGGCUAUCGCUGACAUAUAUCUUUGCCU__
.....((((((((((((((((((((((.........))))))))))))...(((((....)))))......)))).......((.....)).....))))))................. (-29.23 = -30.47 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:48 2006