| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,538,999 – 11,539,103 |
| Length | 104 |
| Max. P | 0.895101 |
| Location | 11,538,999 – 11,539,103 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.75 |
| Mean single sequence MFE | -33.51 |
| Consensus MFE | -23.90 |
| Energy contribution | -23.82 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11538999 104 - 20766785 ----GGACAAUAUAGGUU------ACUACUACUUACCGGGGCAUCCAUCUUCCGCUCCAUGCUCAUGCCAUUCCGCAUGGCGUGCUGCUGAUGAUGGGACAUGUCGCCCAUUUG ----..........(((.------..........))).((((..(((((.((.((..(((((.(((((......))))))))))..)).)).)))))((....))))))..... ( -37.00) >DroGri_CAF1 2811 102 - 1 ----GAGAGAUACAGAUU--------UGGAACUUACAGGUGCAUCCAUUUUGCGCUCCAUGCUCAUGCCGUUGCGCAUGGCAUGCUGAUGAUGAUGGGUCAUAUCGCCCAUUUG ----........(((...--------...........((((((.......)))))).(((((.(((((......))))))))))))).....(((((((......))))))).. ( -30.30) >DroEre_CAF1 2216 110 - 1 ----CGACGAUAUUGAUCCGUGUUAACACUACUUACCGGGGCAUCCAUCUUUCGCUCCAUGCUCAUGCCAUUCCGCAUGGCGUGCUGCUGAUGAUGGGACAUAUCGCCCAUUUG ----...((((((((..(((.((...........)))))..))((((((.((.((..(((((.(((((......))))))))))..)).)).))))))..))))))........ ( -34.60) >DroYak_CAF1 2223 110 - 1 ----UGACCAUAUUGAUCCAUGUGAGCACUACUUACCGGAGCAUCCAUCUUCCGCUCCAUGCUCAUGCCAUUCCGCAUGGCAUGCUGCUGAUGAUGGGACAUAUCGCCCAUUUG ----.........((.(((..(((((.....))))).))).))((((((.((.((..(((((.(((((......))))))))))..)).)).))))))................ ( -34.30) >DroMoj_CAF1 2715 105 - 1 ACCAGAGAGAGAGAG-UC--------UUCAACUUACCGGUGCAUCCAUUUUGCGCUCCAUGCUCAUGCCAUUGCGCAUGGCGUGCUGCUGAUGGUGGGUCAUGUCGCCCAUUUG (((.(.(((.(((..-..--------)))..))).).)))....(((((..((((.((((((.((......)).)))))).))))....)))))(((((......))))).... ( -32.50) >DroAna_CAF1 2031 100 - 1 ----GGUGAAAAUA-AU---------CAUUACUUACCGGAGCAUCCAUCUUGCGUUCCAUGCUCAUUCCAUUCCGCAUGGCAUGCUGGUGGUGAUGCGAUAUGUCGCCCAUCUG ----(((((.....-..---------(((((((.(((((.....)).....((((.((((((............)))))).)))).)))))))))).......)))))...... ( -32.34) >consensus ____GGACGAUAUAGAUC________CACUACUUACCGGAGCAUCCAUCUUGCGCUCCAUGCUCAUGCCAUUCCGCAUGGCAUGCUGCUGAUGAUGGGACAUAUCGCCCAUUUG .....................................((.((..(((((....((..(((((.(((((......))))))))))..))....)))))(......)))))..... (-23.90 = -23.82 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:44 2006