| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,536,830 – 11,536,946 |
| Length | 116 |
| Max. P | 0.773968 |
| Location | 11,536,830 – 11,536,946 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 79.44 |
| Mean single sequence MFE | -51.83 |
| Consensus MFE | -32.54 |
| Energy contribution | -33.65 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11536830 116 + 20766785 CCAUC--UGGCCGGAUCCGGGAC-AGAGUCUGCCGCAAGGUGCUCCGGAAACCGUGUGCGACACCAUGCUGCCGUUCCACUCCGGCGGCAGUGUGCUACCCCAGAACAGUGUGUCGCCC .....--..(((((.((((((((-...))).(((....)))...)))))..))).))((((((((.((((((((........)))))))).(((.((.....)).)))).))))))).. ( -46.10) >DroVir_CAF1 1878 113 + 1 UCAGCUGCGGC------UCGGUGCGCUCUUUGCCUCAAGGUGCACCGGAAACGGUGUGCGACACGAUGCUGCCGUUCCAUGCCGGCGGCACGGUGCUGCCCGAGAACAGUGUCUCGCCC ...((.(((((------(((((((((.....(((....)))((((((....))))))))).)))..((((((((........))))))))))).)))))..((((......)))))).. ( -52.40) >DroPse_CAF1 4236 116 + 1 CUACC--UGGCUGGCGCCCAGUC-AGAGCUUGCCGCAAGGUGCACCGGAAACGGUGUGCGACACAAUGCUGCCGUUCCAUUCGGGUGGCAGUGUGCUGCCCCAGAACAGUGUCUCCCCC ....(--(((((((...))))))-)).((..(((....)))((((((....))))))))(((((...(((((((..(.....)..)))))))((.(((...))).)).)))))...... ( -54.40) >DroGri_CAF1 62 113 + 1 UCAUUGUUGGC------UGCGUGCGUGGCUUGCCACAAGGUGCACCGGAAACGGUAUGCGACACAAUGCUGCCGUUCCAUGCCGGCGGCACGGUGCUGCCCGAGAACAGUGUCUCCCCC .((((((((((------.((((((((((....))))...((..((((....))))..))).)))..((((((((........))))))))....)).)))....)))))))........ ( -46.90) >DroMoj_CAF1 77 119 + 1 UCAGCUGCGGCUGCCACUCGGUGUGGGCCUUGCCUCAAGGUGCACCGGAAACGGUGUGCGACACAAUGCUGCCGUUCCAUGCCGGCGGCUCGGUGCUGCCAGAGAACAGCGUCUCGCCU ...((.(((((.(((.....((((.(((((((...))))))((((((....)))))).).))))...(((((((........)))))))..))))))))..((((......)))))).. ( -54.10) >DroPer_CAF1 4148 116 + 1 CUACC--UGGCUGGCGCCCAGCC-AGAGCUUGCCGCAAGGUGCACCGGAAACGGUGUGCGACACAAUGCUGCCGUUCCAUUCGGGUGGCAGUGUGCUGCCCCAGAACAGUGUCUCCCCC ....(--(((((((...))))))-)).((..(((....)))((((((....))))))))(((((...(((((((..(.....)..)))))))((.(((...))).)).)))))...... ( -57.10) >consensus CCACC__UGGCUGGC_CCCGGUC_AGAGCUUGCCGCAAGGUGCACCGGAAACGGUGUGCGACACAAUGCUGCCGUUCCAUGCCGGCGGCACGGUGCUGCCCCAGAACAGUGUCUCCCCC ........(((....................))).....((((((((....))))))))(((((..((((((((........))))))))..((.((.....)).)).)))))...... (-32.54 = -33.65 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:43 2006