| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,505,693 – 11,505,787 |
| Length | 94 |
| Max. P | 0.590723 |
| Location | 11,505,693 – 11,505,787 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 68.94 |
| Mean single sequence MFE | -21.95 |
| Consensus MFE | -12.99 |
| Energy contribution | -12.80 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11505693 94 - 20766785 AUCAUAUUCCAGGCACUCGCCUUCCUGGCCUUCGCCUCGCACAUACGCACAAUGCUCUCGGAUCCGGUGAGUUGCUG------A------UGGCCAUGCACUUUAU ..........((((....))))...(((((.(((((((((......((.....))...((....)))))))..)).)------)------.))))).......... ( -25.10) >DroPse_CAF1 39858 74 - 1 AUUAUAUUCCAAGCGCUGGCGUUCCUAGCAUUUGCCUCUCACAUACGCACCAUGCUCUCGGAUCCGGUAAGUAG-------------------------------- ..............(((((...(((.(((((.(((...........)))..)))))...))).)))))......-------------------------------- ( -14.20) >DroSec_CAF1 46216 100 - 1 AUCAUAUUCCAGGCACUCGCCUUCCUGGCCUUCGCCUCGCACAUACGCACAAUGCUCUCGGAUCCGGUGAGUUGCUG------GCCAGUCUGGCCAUGUACUUCAU ...........((((((((((.(((.(((....)))..((......))...........)))...)))))).))))(------(((.....))))........... ( -30.70) >DroWil_CAF1 58611 87 - 1 AUUAUAUUUCAGGCCUUGGCCUUUUUGGCCUUUGCCUCCCACAUACGCACCAUGCUCUCGGAUCCGGUAAGCCCUCGACGAUAGCAA------------------- ..........((((...((((.....))))...))))...............((((.(((.....((....)).....))).)))).------------------- ( -23.60) >DroAna_CAF1 45179 86 - 1 GCUAUAUUCCAGGCAUUGGCCUUUUUGGCAUUUGCCUCCCACAUACGCACAAUGCUAUCGGACCCGGUAGGUACUCG-----GGCUAAUCU--------------- .......((((((((...(((.....)))...))))).........((.....))....)))((((((....)).))-----)).......--------------- ( -23.90) >DroPer_CAF1 37952 74 - 1 AUUAUAUUCCAAGCGCUGGCGUUCCUAGCAUUUGCCUCCCACAUACGCACCAUGCUCUCGGAUCCGGUAAGUAC-------------------------------- ..............(((((...(((.(((((.(((...........)))..)))))...))).)))))......-------------------------------- ( -14.20) >consensus AUUAUAUUCCAGGCACUGGCCUUCCUGGCAUUUGCCUCCCACAUACGCACAAUGCUCUCGGAUCCGGUAAGUAC__G______G______________________ .((((..(((((((....(((.....)))....)))).........((.....))....)))....)))).................................... (-12.99 = -12.80 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:35 2006