Locus 3397

Sequence ID 2R_DroMel_CAF1
Location 11,492,107 – 11,492,215
Length 108
Max. P 0.500000
window5551

overview

Window 1

Location 11,492,107 – 11,492,215
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 77.87
Mean single sequence MFE -25.33
Consensus MFE -4.56
Energy contribution -6.08
Covariance contribution 1.52
Combinations/Pair 1.35
Mean z-score -1.62
Structure conservation index 0.18
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11492107 108 - 20766785
AGGAAUUCCUGGAAGAAAAAGAACUAAAGGCAAGUGCGAAAAAGCAAGGUGAUCAGGAUAUCGAACAGAAGUCCCAGAAACCAGAAGUAUCUGAGGUCGUAGCUGAGA
(((....))).............((...(((...(((......)))....((((.((((.((.....)).))))((((.((.....)).)))).))))...))).)). ( -23.10)
>DroSec_CAF1 32012 108 - 1
AGCAAGUCCUGGAAGAAAAAGAACUAGAGGCACGUGCUCAAAAACAAGGUGAUCAGGAUGUCGAAAAGAAGUCCGAGAAGCCAGAAGUAUCUGAGGUCGUAGCUGAGA
(((..(((((((...........)))).)))(((..(((........(((..((.((((.((.....)).))))))...)))(((....))))))..))).))).... ( -25.00)
>DroSim_CAF1 33660 108 - 1
AGCAAGUCCUGGAAGAAAAAGAACUAGAGGCUAGUGCACAAAAACAAGGUGAUCAGGAUGUGGAACAGAAGUCCCAGAAACCAGAAGUAUCUGAGGUCGUAGCUGAAA
..((.(((((((..........(((((...))))).(((.........))).))))))).))...(((..(.((((((.((.....)).)))).)).)....)))... ( -24.80)
>DroEre_CAF1 33669 108 - 1
AACAAGCCCUUGAAGAAAAGCAACUAGAGGAUAGUGCACAAAAGCAAGCUGAUCAGAAUGUCGAACAGAAGCCGCAGAAACCAGAAGUAUCUGAGGUCGUAGCUGAGA
....(((.((((.......(((.(((.....)))))).......))))(((.((........)).)))..(((.((((.((.....)).)))).)))....))).... ( -19.84)
>DroAna_CAF1 32635 108 - 1
AGCAGUCUCUGGAAGAGCAGAAAUUAGAUGCUAAGACCCAGAAACAAGCCGAAUCGGCGUCUGAAAAGAAAUCAGAGACGGCGGAAGUAUCUGAAGUGCUUGCCGAGG
.((.((((((((...((((.........))))......((((.....((((...)))).))))........)))))))).))((((((((.....)))))).)).... ( -33.90)
>consensus
AGCAAGUCCUGGAAGAAAAAGAACUAGAGGCUAGUGCACAAAAACAAGGUGAUCAGGAUGUCGAACAGAAGUCCCAGAAACCAGAAGUAUCUGAGGUCGUAGCUGAGA
.....(.(((...(((......((((.....))))............(((.....((((.((.....)).)))).....))).......))).))).).......... ( -4.56 =  -6.08 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:33 2006