Locus 339

Sequence ID 2R_DroMel_CAF1
Location 2,236,414 – 2,236,509
Length 95
Max. P 0.943110
window681

overview

Window 1

Location 2,236,414 – 2,236,509
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 96.14
Mean single sequence MFE -45.47
Consensus MFE -42.81
Energy contribution -42.88
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -2.17
Structure conservation index 0.94
SVM decision value 1.33
SVM RNA-class probability 0.943110
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2236414 95 + 20766785
AGCAGCUGCAGAGGCUGGCGGGGAAUCCCCCUCAGAACCUGCCGCUGGCGCAUCCUCCGCCCCACCAGCGGCCGCCUCGGAAGGAUCCGCCUCAC
.((....)).(((((.(((((((....)))).........((((((((.((.......))....)))))))).)))..(((....)))))))).. ( -43.00)
>DroSec_CAF1 3004 95 + 1
AGCAGCUGCAGAGGCUGGCGGGGAAUCCCCCUCAGAACCUGCCGCUGGCGCAUCCUCCGCCCCGCCAGCGGCCGCCUCGGAAGGAUCCGCCUCAC
.((....)).(((((.(((((((....)))).........((((((((((............)))))))))).)))..(((....)))))))).. ( -47.10)
>DroSim_CAF1 3002 95 + 1
AGCAGCUGCAGAGGCUGGCGGGGAAUCCCCCUCAGAACCUGCCGCUGGCGCAUCCUCCGCCCCGCCAGCGGCCGCCUCGGAAGGAUCCGCCUCAC
.((....)).(((((.(((((((....)))).........((((((((((............)))))))))).)))..(((....)))))))).. ( -47.10)
>DroEre_CAF1 3078 95 + 1
AGCAGCUGCAGAGGCUGGCGGGGAUUCCGCCUCGGCACCUGCCGCUGGUGCAUCCUCCGCCCCACCAGCGGCCGCCUCGGAAGGAUCUGCCUCAC
.((....)).(((((.(((((.....)))))..(((....((((((((((............)))))))))).)))((....))....))))).. ( -44.70)
>consensus
AGCAGCUGCAGAGGCUGGCGGGGAAUCCCCCUCAGAACCUGCCGCUGGCGCAUCCUCCGCCCCACCAGCGGCCGCCUCGGAAGGAUCCGCCUCAC
.((....)).(((((.(((((((....)))).........((((((((((............)))))))))).)))..(((....)))))))).. (-42.81 = -42.88 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:54 2006