Locus 338

Sequence ID 2R_DroMel_CAF1
Location 2,195,441 – 2,195,538
Length 97
Max. P 0.987534
window680

overview

Window 0

Location 2,195,441 – 2,195,538
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 66.80
Mean single sequence MFE -33.56
Consensus MFE -14.75
Energy contribution -15.15
Covariance contribution 0.40
Combinations/Pair 1.45
Mean z-score -2.34
Structure conservation index 0.44
SVM decision value 2.08
SVM RNA-class probability 0.987534
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2195441 97 + 20766785
CAACGUGGCUUUCAGCUAUCAACGGGCACAAUGCUCUCUAGUUUGGAGCAGUUGAAAGUCAUCGAAGGCCAGGCAACGAAGGCCAAGACCACGGCCA
...((((((((((((((......(....)...(((((.......))))))))))))))))).))..((((.(....)...((......))..)))). ( -34.00)
>DroSec_CAF1 19509 97 + 1
CAACGUGGCUUUCAGAUGUCAACGAGCUCCAUGCUUUCCAGUUUGGAGCAGUUGAAAGUCAUCGAAGGCCAGGCUACGAAGGCGAAGUCCAAGGCCA
...(.((((((((.(((((((((..((((((.(((....))).)))))).)))))....)))))))))))).).......(((..........))). ( -37.80)
>DroEre_CAF1 21350 97 + 1
CAACGGUGCUUUCUGUCCUCAACGGGAUCCAUGCUCUCCAAUUUGGAGCAGUUGAAAGCCAUUGAAGGCCAGGCAACGAAGUCCAAGUCCAACACCA
....((.(((((.((((.(((((((...)).((((((.......)))))))))))..(((......)))..))))..)))))))............. ( -24.10)
>DroYak_CAF1 19349 97 + 1
CAACGGGGCUUUUUGCCCCCAACGGGCUCCAUGCUCUCCAAUUUGGAGCAGUUGAAAAUCAUUGAAGGCCAGGUAACGAAGGCCAACUCCAUGACCA
....(((((.....)))))((((..((((((............)))))).))))....((((.((.((((.(....)...))))...)).))))... ( -33.70)
>DroAna_CAF1 25171 73 + 1
GAGAGGGGCCUGAAG------GCGGGCUAUGCGCCGCCUAGUCUGGACAAGCCCAUGGCGGUGGACGGCAAGGG--------C----------CCCA
....(((((((..((------((((((...)).)))))).(.(((..((.(((...)))..))..))))..)))--------)----------))). ( -38.20)
>consensus
CAACGGGGCUUUCAGCCCUCAACGGGCUCCAUGCUCUCCAGUUUGGAGCAGUUGAAAGUCAUCGAAGGCCAGGCAACGAAGGCCAAGUCCAAGACCA
......(((((((.....(((((.(((.....)))((((.....))))..)))))........))))))).(((...................))). (-14.75 = -15.15 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:53 2006