Locus 3378

Sequence ID 2R_DroMel_CAF1
Location 11,434,070 – 11,434,170
Length 100
Max. P 0.992538
window5517

overview

Window 7

Location 11,434,070 – 11,434,170
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 83.66
Mean single sequence MFE -23.73
Consensus MFE -20.10
Energy contribution -19.98
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -2.59
Structure conservation index 0.85
SVM decision value 2.33
SVM RNA-class probability 0.992538
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11434070 100 - 20766785
CGAUGCCCUAGGCCAAUUCCAAAUCCAAAUCCAAUUCCUAUUCC-UAUUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA
.(((.((((((.((((((((((........((((..........-.....................)))).......))).))))))).)))))))))... ( -23.84)
>DroSec_CAF1 52922 100 - 1
CGAUGCCCUAUGCCAAUUCCAAUUCCAAAUCCAAUUCCUAUUCC-UAUUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA
.(((.(((((..((((((((((((......((((..........-.....................)))).....))))).)))))))..))))))))... ( -24.08)
>DroSim_CAF1 42539 95 - 1
CGAUGCCUUAGGCCAAUUCCAAUUCCAA------UUCCUAUUCCUUAUUCUUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA
.(((.((((((.((((((((((((..((------((((..............................)).))))))))).))))))).)))))))))... ( -21.01)
>DroEre_CAF1 49728 81 - 1
UGAUGCCCUAGGCCAAUUCCAAU-------------------CC-UAUUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA
((((.((((((.(((((((((((-------------------..-.(((((.................)).)))..)))).))))))).)))))))))).. ( -23.83)
>DroYak_CAF1 48443 76 - 1
UGAUGCCCUAGGCCAAUUCCAA-------------------------UUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA
((((.((((((.((((((((((-------------------------((...((((((.........))).))).))))).))))))).)))))))))).. ( -25.90)
>consensus
CGAUGCCCUAGGCCAAUUCCAAUUCCAA______UUCCUAUUCC_UAUUCCUAUUCCAUCGAUGCUUUGGUAAUUAGUUGUGAAUUGGAUUGGGGAUCACA
.(((.((((((.((((((((((............................(((..(((.........)))....)))))).))))))).)))))))))... (-20.10 = -19.98 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:01 2006