| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,427,223 – 11,427,313 |
| Length | 90 |
| Max. P | 0.600184 |
| Location | 11,427,223 – 11,427,313 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.24 |
| Mean single sequence MFE | -40.97 |
| Consensus MFE | -25.32 |
| Energy contribution | -25.40 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.600184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11427223 90 + 20766785 -GCGUGGGCUGGGC---UAUUGCACGAAGCUCCUGGGUCGG--AGGA----------------CGUUCCAUGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.(((.(((.(((((.--.((.----------------(((...)))))..))))).))).))).))..))))))).))).))))). ( -41.20) >DroSec_CAF1 41861 92 + 1 -GCGUGGGCUGGGC---UGUUGCACGGAGCUCCUGGGUCGGGGAGGA----------------CGUUCCAUGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.(((.(((.(((((((.(((.----------------....)).).))..))))).))).))).))..))))))).))).))))). ( -43.40) >DroSim_CAF1 35850 92 + 1 -GCGUGGGCUGGGC---UGUUGCACGGAGCUCUUGGGUCGGGGUGGA----------------CGUUCCAUGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.((((((..((((((.((((.----------------....)))).)))))..)..))).))).))..))))))).))).))))). ( -45.80) >DroEre_CAF1 42986 90 + 1 -GCAUGGGUUGGGC---UGUUGCACACCACUUCUGGGUCGG--AGGA----------------CGUACCACGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.((((((..(((((.--.((.----------------((.....))))..))))))))))).))....))))))).))).))))). ( -37.70) >DroYak_CAF1 41597 90 + 1 -GCAUGGGUUGGGC---UGUUGCACACCACUUCUGGGUCGG--AGGA----------------CGUACCACGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG -...(((((.(((.---(((((((((.((((((..(((((.--.((.----------------((.....))))..))))))))))).))....))))))).))).))))). ( -37.70) >DroPer_CAF1 45562 110 + 1 GACGUGGGAUGGUCUGGUGUUGCACGGUGAUUGCGAGUGGGUUAUGGCUGUAUGCGUCUCCUGUGUCCUGUGCCCGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUCGCC-- ...(((((..((.(.((.(.((((((((.((.((......)).)).)))))..))).).))...).))....)))))(((.((((((((((....))))).))))).)))-- ( -40.00) >consensus _GCGUGGGCUGGGC___UGUUGCACGGAGCUCCUGGGUCGG__AGGA________________CGUUCCAUGCCGGCGGCUGAGGUGUUGCGAUUGCAAUAACCUUGCCCGG .....((((.(((....(((((((..............(((...((.....................))...)))(((((......)))))...))))))).))).)))).. (-25.32 = -25.40 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:56 2006