Locus 3370

Sequence ID 2R_DroMel_CAF1
Location 11,415,316 – 11,415,420
Length 104
Max. P 0.614070
window5507

overview

Window 7

Location 11,415,316 – 11,415,420
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 92.79
Mean single sequence MFE -29.55
Consensus MFE -23.60
Energy contribution -24.22
Covariance contribution 0.62
Combinations/Pair 1.08
Mean z-score -1.72
Structure conservation index 0.80
SVM decision value 0.16
SVM RNA-class probability 0.614070
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11415316 104 - 20766785
CUCGACGUUUCACUUUUGAGAAGGGUAGCCACCAAAUUGGGGUCACCUUUUCAGGGUGGCAUCCUUAUAUUGCAAGUCUUCGUUUGCCAUGAUCAAUUUUAUAA
(((((..........)))))((((((.((((((.....(((....)))......)))))))))))).(((.(((((......))))).)))............. ( -28.20)
>DroSec_CAF1 29854 104 - 1
CUCGGCGUUUCACUUUUGAGAAGGGUGGCCACCAAAUUGGGGUCACCUUUUCAGGGUGGCAUCCUUAUAUUGCAAGUCUUCGUUUGCCAUGAUCAAUUUUAUAA
...((((...((((((.(((((((.(((((.((.....))))))))))))))))))))(((.........)))...........))))................ ( -32.30)
>DroEre_CAF1 31060 104 - 1
GUGAGCGUUUCACUUAUGAGAAGGGUAGCCACCGAAUUGGGGUCACCUUUUCAGGGUGGCAUCCUUGUAUUGCAAGUCUUCGUUUGCCAUGAUCAAUUUUAUAA
(..((((....((((..((.((((((.(((((((((..((.....))..)))..))))))))))))...))..))))...))))..)................. ( -32.10)
>DroYak_CAF1 29636 103 - 1
CUCGGCGUUUCACUUG-GAGAUGGGUAGCCCCCAAAUUUGGGUCACCUUUUCAGGGUGGCAUCCUUGUAUUGCAAGUUUUCGUUUGCUAUGAUCAAUUUUAUAA
...((.((.(((((..-((((.((((..(((........)))..))))))))..))))).)))).......(((((......)))))(((((......))))). ( -25.60)
>consensus
CUCGGCGUUUCACUUUUGAGAAGGGUAGCCACCAAAUUGGGGUCACCUUUUCAGGGUGGCAUCCUUAUAUUGCAAGUCUUCGUUUGCCAUGAUCAAUUUUAUAA
...((((....((((.(((.((((((.((((((.....(((....)))......))))))))))))...))).))))...)))).................... (-23.60 = -24.22 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:52 2006