| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,195,201 – 2,195,302 |
| Length | 101 |
| Max. P | 0.859995 |
| Location | 2,195,201 – 2,195,302 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 66.21 |
| Mean single sequence MFE | -27.08 |
| Consensus MFE | -9.05 |
| Energy contribution | -8.38 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2195201 101 - 20766785 CUGGGCAGGAAACCUCGUUUUUUCAGAUAGACAACUGGCGACUCCCAGUUCUUAAUCAAAUUCUGCACGACCUCAUUAUAGGCAUGC----AAUGGGUCGUCUGU ....((((((((........)))).(((.((.((((((......)))))).)).))).....))))((((((.((((.((....)).----)))))))))).... ( -26.60) >DroVir_CAF1 19882 90 - 1 CUGGGCAGGUAGCCCAGUUGUCGCAGAUAUAUAAUCGGGGACUCCCAGUUCUUGAUUAAAUCGCGCACAAUCUCAUUGUAGUUA---UGAA------------AG ((((((.....))))))(((((((.(((...(((((((((((.....))))))))))).)))))).))))..((((.......)---))).------------.. ( -30.30) >DroGri_CAF1 23217 90 - 1 CUGGGCAAAUAGCCCAGCUGGCGCAGAUACACAAUUGGUGACUCCCAAUUCUUGAUCAAAUCACGCACAAUAUCAUUGUAAUUG---UGUA------------AG ((((((.....))))))...((((((.((((.((((((......))))))..((((...)))).............)))).)))---))).------------.. ( -23.10) >DroSec_CAF1 19275 101 - 1 CUGGGCAGGAAACCUCGUUUUUUCAGAUAGAAAACUGGAUACUCCCAGUUCCUAAUCAAAUUUUGGACGACCUCAUUAUAGGCCUGC----AAUGGGUCGUCUGU (((((.((....((..(((((((.....))))))).))...)))))))................((((((((.((((.((....)).----)))))))))))).. ( -29.20) >DroYak_CAF1 19112 101 - 1 CUGGGCAGAAACCCUUGUUUCUUCAGAUACACGACUGGAGACUCCCAGUUCUUUAUCAAAUUCUGCACGACCUCAUUAUAAGCCUGU----AAUGGGUCGUCCUU ..((((((((.....((......))((((.(.((((((......)))))).).))))...))))))((((((.(((((((....)))----)))))))))))).. ( -33.60) >DroMoj_CAF1 22460 93 - 1 UUGGGCAGAUAACCCAAUUGCCGCAGAUAUACAAUCGGUGACUCCCAGUUCUUGAUUAAGUCCCGCACAAUUGCAUUGUAGUUAUUGUGAA------------AG (((((.......)))))....(((((...((((((.((.((((...............))))))(((....)))))))))....)))))..------------.. ( -19.66) >consensus CUGGGCAGAAAACCCAGUUGUCGCAGAUACACAACUGGAGACUCCCAGUUCUUGAUCAAAUCCCGCACAACCUCAUUAUAGGCAUG_________________AG ..(((.......)))..........(((....((((((......))))))....)))................................................ ( -9.05 = -8.38 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:52 2006