Locus 3368

Sequence ID 2R_DroMel_CAF1
Location 11,411,970 – 11,412,063
Length 93
Max. P 0.717062
window5503

overview

Window 3

Location 11,411,970 – 11,412,063
Length 93
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 76.86
Mean single sequence MFE -18.82
Consensus MFE -1.36
Energy contribution -2.04
Covariance contribution 0.68
Combinations/Pair 1.12
Mean z-score -1.56
Structure conservation index 0.07
SVM decision value 0.39
SVM RNA-class probability 0.717062
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11411970 93 - 20766785
UCAAAUUCAACUAUAACAGCACAUUGUUUACAACGCCCCCGAA----C-CCCUUUCGCU-GGGACCCUCGAACG-----GCAUCCCAAACAAAACCCGGGG--CAC
..............(((((....)))))......(((((((((----.-....)))).(-((((.((......)-----)..)))))..........))))--).. ( -20.70)
>DroPse_CAF1 28578 105 - 1
UCAAAUUCAACUAUAACAGCACAUUGUUUGCCACGCCCCCGCUUGCGCCCCACACCGCUCCAGACCCUUGAGUGGGGAAGCCCCUUCAUCAGCAUCCAC-AUCCAC
........................(((..((((.((....)).)).))...)))((((((.((...)).))))))(((.((..........)).)))..-...... ( -17.10)
>DroSec_CAF1 24973 93 - 1
UCAAAUUCAACUAUAACAGCACAUUGUUUACAACGCCCCCGAA----C-CCCUUUCGCU-GGGACACUCGAAUG-----GCAUCCCAAACAAAACCCGGGG--CAC
..............(((((....)))))......(((((((((----.-....)))).(-((((..((.....)-----)..)))))..........))))--).. ( -19.30)
>DroSim_CAF1 24709 93 - 1
UCAAAUUCAACUAUAACAGCACAUUGUUUACAACGCCCCCGAA----C-CCCUUUCGCU-GGGACACUCGAAUG-----GCAUCCCAAACAAAACCCGGGG--CAC
..............(((((....)))))......(((((((((----.-....)))).(-((((..((.....)-----)..)))))..........))))--).. ( -19.30)
>DroPer_CAF1 29477 105 - 1
UCAAAUUCAACUAUAACAGCACAUUGUUUGCCACGCCCCCGCUUGCGCCCCACACCGCUCCAGACCCUCGAGUGGGGAAGCCCCUUCAUCAGCAUCCAC-AUCCAC
........................((..(((......((((((((((........)))....(.....))))))))((((...))))....)))..)).-...... ( -17.70)
>consensus
UCAAAUUCAACUAUAACAGCACAUUGUUUACAACGCCCCCGAA____C_CCCUUUCGCU_GGGACCCUCGAAUG_____GCAUCCCAAACAAAACCCGGGG__CAC
....((((......(((((....))))).......(((.((((..........))))...)))......))))................................. ( -1.36 =  -2.04 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:48 2006