| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,396,136 – 11,396,234 |
| Length | 98 |
| Max. P | 0.775065 |
| Location | 11,396,136 – 11,396,234 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 90.07 |
| Mean single sequence MFE | -31.78 |
| Consensus MFE | -28.04 |
| Energy contribution | -28.35 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11396136 98 + 20766785 --UGGUGGGCGUUGAGCAGGCGGCGUUCAGCGGACGUGAAGAGGUCGAGGAGUAAGGAAGUGGAGGAAUGGAGGAGUAGGUCUCCAUGUACUUACACCGU --.(.(((((((((......))))))))).).(((.(....).)))..((.(((((...(((((((..((......))..)))))))...))))).)).. ( -33.60) >DroSec_CAF1 9105 98 + 1 --UGGUGGGCGUUGAGCAGGCGGCGUUCAGCGGACGUGGAGAGGUCGAGGAGUAAGGCAGUGGAGGAAUGGAGGAGUGGGUCUCCAUGUACUUACACCGU --.(.(((((((((......))))))))).).(((.(....).)))..((.(((((...(((((((.((......))...)))))))...))))).)).. ( -32.90) >DroSim_CAF1 8702 98 + 1 --UGGUGGGCGUUGAGCAGGCGGCGUUCAGCGGACGUGGAGAGGUCGAGGAGUAAGGCAGUGGAGGAAUGGAGGAGUGGGUCUCCAUGUACUUACACCGU --.(.(((((((((......))))))))).).(((.(....).)))..((.(((((...(((((((.((......))...)))))))...))))).)).. ( -32.90) >DroYak_CAF1 9918 100 + 1 GUUGGUGGGCGUUAAGGAGGCGGCGUUCAGCGGGCGUCGAGAGGUCGAGGAUUGGAGGAGUGAAGGAGUGAGGGAAUGGGACUCCAUGUACUUACACCGU ...(((((((.((..(..(.(.((.....)).).)..)..)).)))...........(((((..(((((...........)))))...))))).)))).. ( -27.70) >consensus __UGGUGGGCGUUGAGCAGGCGGCGUUCAGCGGACGUGGAGAGGUCGAGGAGUAAGGCAGUGGAGGAAUGGAGGAGUGGGUCUCCAUGUACUUACACCGU ..((.(((((((((......))))))))).))(((.(....).)))..((.(((((...(((((((.((......))...)))))))...))))).)).. (-28.04 = -28.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:42 2006