| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,393,344 – 11,393,436 |
| Length | 92 |
| Max. P | 0.899827 |
| Location | 11,393,344 – 11,393,436 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.16 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -13.54 |
| Energy contribution | -14.02 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899827 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11393344 92 - 20766785 ----GAGAAUAC------------GUGGCAGUGGCCAUGUGUGUGUGUGUG-UGCGCCUUCGAUGAUUUAAUUAAUUAAAAUUGAGUUCAAUGGAGAGCGCCCAAGCCA ----....((((------------(((((....))))))))).((.((.((-.(((((((((.((((((((((......))))))).))).))))).)))).)).)))) ( -32.50) >DroGri_CAF1 11929 98 - 1 CCGAGAAAACACACACGGAC----A---CACA-CACAAUUGCGAGU--GUGCGCUGCCUUCGAUGAUUUAAUUAAUUAAAAUCGAGUUCAAUAAAAAGCGCAA-AGCCA ................((((----(---(.(.-((....)).).))--))(((((...((((((..(((((....)))))))))))..........)))))..-..)). ( -16.52) >DroSec_CAF1 6303 84 - 1 ----GAGAAUAC------------A---CACU-GCCAUGUGUGU----GUG-UGCGCCUUCGAUGAUUUAAUUAAUUAAAAUUGAGUUCAAUGGAGAGCGCCCAAGCCA ----....((((------------(---(((.-.....))))))----))(-.(((((((((.((((((((((......))))))).))).))))).)))).)...... ( -27.80) >DroSim_CAF1 5900 86 - 1 ----GAGAAUAC------------A---CACU-GCCAUGUGUGUGU--GUG-UGUGCCUUCGAUGAUUUAAUUAAUUAAAAUUGAGUUCAAUGGAGAGCGCCCAAGCCA ----....((((------------(---(((.-.....))))))))--.((-.(((((((((.((((((((((......))))))).))).))))).)))).))..... ( -26.80) >DroEre_CAF1 8903 80 - 1 ----GAGAACAC------------A---CACU-GCCAUGU--------GUG-UGCGCCUUCGAUGAUUUAAUUAAUUAAAAUUGAGUUCAAUGGAGAGCGCCCAAGCCA ----....((((------------(---((..-....)))--------)))-)(((((((((.((((((((((......))))))).))).))))).))))........ ( -25.20) >DroYak_CAF1 6913 88 - 1 ----GAGAACAC----ACACACACA---CACU-GGCAUGU--------GUG-UGCGCCUUCGAUGAUUUAAUUAAUUAAAAUCGAGUUCAAUGGAGAGCGCCCAAGCCA ----....((((----(((..((..---...)-)...)))--------)))-)(((((((((.(((((..(((......)))..)).))).))))).))))........ ( -22.60) >consensus ____GAGAACAC____________A___CACU_GCCAUGUGUGU____GUG_UGCGCCUUCGAUGAUUUAAUUAAUUAAAAUUGAGUUCAAUGGAGAGCGCCCAAGCCA ................................................((...(((((((((.((((((((((......))))))).))).))))).))))....)).. (-13.54 = -14.02 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:41 2006