| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,188,542 – 2,188,641 |
| Length | 99 |
| Max. P | 0.758285 |
| Location | 2,188,542 – 2,188,641 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.03 |
| Mean single sequence MFE | -31.16 |
| Consensus MFE | -21.20 |
| Energy contribution | -23.53 |
| Covariance contribution | 2.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.758285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2188542 99 + 20766785 CCGGGGAUCUUAAUCCCAUUGAGGUCUCCUUGAUGAAAACCAUAUCC------------------UUGGCAUUGUGUUCGUUUGUGGGUGGAAUAUCAUUUUCUAAACAGAUGCACA ((((((((........(((..(((...)))..)))........))))------------------))))...(((((..((((((...(((((.......))))).))))))))))) ( -28.69) >DroSec_CAF1 12738 114 + 1 CCGGGGAUCUCAAUCCCAAUGACGUAUUCUUG---AGAACCAUAUCCGACUAUGGUAUACGAUUUAUGGUAUUGUGUGCGUUUGUGGGUGGAAUAUAAUUCUCUAAACAGAUGCACA ((((((((....))))).....(((((((...---.))((((((......))))))))))).....))).....(((((((((((..(.(((((...))))).)..))))))))))) ( -32.30) >DroSim_CAF1 12329 114 + 1 CCGGGGAUCUUAAUCCCAAUGACGUAUUCUUG---AGAACCAUAUCCGACUAUGGUAUACGAUGAAUGGUAUUGUGUGCGUUUGUGGGUGGAAUAUCAUUCUCUAAACAGAUGCACA ...(((((....)))))....((.((((((((---...((((((......))))))...))).)))))))....(((((((((((..(.(((((...))))).)..))))))))))) ( -32.50) >consensus CCGGGGAUCUUAAUCCCAAUGACGUAUUCUUG___AGAACCAUAUCCGACUAUGGUAUACGAU__AUGGUAUUGUGUGCGUUUGUGGGUGGAAUAUCAUUCUCUAAACAGAUGCACA ((((((((....))))).....................((((((......))))))..........))).....(((((((((((...((((.........)))).))))))))))) (-21.20 = -23.53 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:51 2006