Locus 3355

Sequence ID 2R_DroMel_CAF1
Location 11,380,316 – 11,380,436
Length 120
Max. P 0.988405
window5484

overview

Window 4

Location 11,380,316 – 11,380,436
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.00
Mean single sequence MFE -42.72
Consensus MFE -35.22
Energy contribution -36.82
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -2.27
Structure conservation index 0.82
SVM decision value 2.12
SVM RNA-class probability 0.988405
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11380316 120 - 20766785
CCCCAUCGGCCAGUCCCUCCGUAAGCAUCUUGAAGCGCAAGCUACGAUGCGAAAGUCUCGAUGAUGUUACUCUGGACUCGCCGGCUCUAAAGCGUAAGCGAGUUAGUUUCCACGACCCAC
.....(((((.(((((....((((.((((....(((....))).(((.((....)).)))..))))))))...))))).)))((..((((.((....))...))))...))..))..... ( -41.20)
>DroSec_CAF1 7574 120 - 1
CCCCAUCGGCCAGUCCCUCGGUAAGCAUCCUGAAGCGCAAGCUGCGAUGCGAAAGUAUCGAUGAUGUUACUCUGGAGUCGCCGGCUCUAAAGCGUAAGCGUGUUAGCUUCCACGACCCAC
.......(((.(.(((...(((((.((((....(((....))).((((((....))))))..)))))))))..))).).)))((.((....((....))(((........))))).)).. ( -42.40)
>DroSim_CAF1 9007 120 - 1
CCCCAUCGGCCAGUCCCUCGGUAAGCAUCCUGAAGCGCAAGCUACGAUGCGAAAGUCUCGAUGAUGUUACUCUGGACUCGCCGGCUCUAAAGCGUAAGCGUGUUAGCUUCCACGACCCAC
.......(((.(((((...(((((.((((....(((....))).(((.((....)).)))..)))))))))..))))).)))((.((....((....))(((........))))).)).. ( -42.80)
>DroEre_CAF1 7731 120 - 1
CCCCUUCGGCCAGUCCCUCGGUCAGCAUCCUAAAGCGCAAGCUGCGAUGCGAAAGUCUCGAUGAUGUUACUCUGGACUCGCCGGCCCUAAAGCGAAAGCGAGUUAGCUUCCACGACCCAC
.......(((.(((((...(((.((((((....(((....))).(((.((....)).)))..)))))))))..))))).)))((..((((.((....))...))))...))......... ( -42.50)
>DroYak_CAF1 7874 120 - 1
CGCCAUCAGCCAGUCCCUCGGUAAGCAUCAUGAAGCGCAAGCUGAGAUGCGAAAGUUUAGAUGAUGUUACUCUAGACUGGCCGGCCCUUAAGCGAAAGCGGGUUAUCUUCCACGACCCAC
.(((....(((((((....(((((.((((((..(((....))).....((....))....)))))))))))...))))))).)))......((....))(((((.........))))).. ( -44.70)
>consensus
CCCCAUCGGCCAGUCCCUCGGUAAGCAUCCUGAAGCGCAAGCUGCGAUGCGAAAGUCUCGAUGAUGUUACUCUGGACUCGCCGGCUCUAAAGCGUAAGCGAGUUAGCUUCCACGACCCAC
.....(((((.(((((...(((.((((((....(((....))).(((.((....)).)))..)))))))))..))))).)))((..((((.((....))...))))...))..))..... (-35.22 = -36.82 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:30 2006