Locus 3345

Sequence ID 2R_DroMel_CAF1
Location 11,357,746 – 11,357,854
Length 108
Max. P 0.920795
window5469

overview

Window 9

Location 11,357,746 – 11,357,854
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 89.46
Mean single sequence MFE -24.96
Consensus MFE -22.79
Energy contribution -23.35
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.91
SVM decision value 1.14
SVM RNA-class probability 0.920795
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11357746 108 - 20766785
ACUGGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGCACAGGCAUCAGCCUUCCCGUUCCUGCCUCUUUCUUUCCCCAAAACCGAUUCACAUAUCAACACUCGCAAAAA
....((.(((.(((((((((.....)))).........((((....))))....))))))))....................(((......))).......))..... ( -23.60)
>DroSec_CAF1 15935 107 - 1
ACUUGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGCACAGGCAUCCGCCUUCCAGUUCCUGCCCCUCUCUUUCCUU-AGACCGAUUCACAUAUCAACACUCGCAGAAA
.....(((((((((((((.......))))...(((...((((....))))..)))................)))))-.....(((......))).......))))... ( -26.30)
>DroEre_CAF1 18234 101 - 1
AGUCGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGC-CGGGCAUCCGCCUUCCAGUUCCUGCCCCUU----UCCCC-AAACC-AUUCACAUACCAGCACUCGCAGAAA
.....((((.((((((((((.....))))....((.-.((((....))))..))))))))((.....----.....-.....-............))....))))... ( -24.13)
>DroYak_CAF1 16222 107 - 1
ACACGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGCUCAGGCAUCCGCCUUCCAGUUCCUGCCCCUUUCUUUCCUC-AAACCGAUUCACAUAUCAACACUCGCAGAAA
.....((((.((((((((((.....)))).........((((....))))....))))))................-.....(((......))).......))))... ( -25.80)
>consensus
ACUCGCUGCAAGGAGCGCGUUAAAAGCGCAUUCUGCACAGGCAUCCGCCUUCCAGUUCCUGCCCCUUUCUUUCCCC_AAACCGAUUCACAUAUCAACACUCGCAGAAA
.....((((.((((((((((.....)))).........((((....))))....))))))......................(((......))).......))))... (-22.79 = -23.35 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:14 2006