| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,356,139 – 11,356,239 |
| Length | 100 |
| Max. P | 0.619218 |
| Location | 11,356,139 – 11,356,239 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.71 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -23.36 |
| Energy contribution | -23.72 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.619218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11356139 100 - 20766785 -GCGGUAUCAGCGGAUCUGGGGUCUUAGCAGCUGCAAGUUUAGCGAAAAGUAAGUAUCGCAAACUUGUAGACUGGUGAGUACCUGGUA-------------GAAGAAUUUUAUG -((.......))...((((((((((((.(((((((((((((.((((..........)))))))))))))).))).)))).))))..))-------------))........... ( -34.10) >DroSec_CAF1 14181 113 - 1 -GUGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGUUCAGCGUAAAGUAAGUAUCGCAAAUUUGUAGACUGGUGAGUACCUGGUAAUGUUACACUUUAGCAGAAUUUUAUG -......(((((.......((((((((.((((((((((((..(((............))).))))))))).))).)))).)))).(((....)))......)))))........ ( -35.20) >DroSim_CAF1 14134 113 - 1 -GCGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGUUCAGCGUAAGGUAAGUAUCGCAAAUUUGUAGACUGGUGAGUACCUGGUAAUGUUACACUUUAACGGAUUUUUAUG -((((...))))(((((((((((((((.((((((((((((..(((............))).))))))))).))).)))).)))).(((....))).......)))))))..... ( -36.10) >DroEre_CAF1 16474 113 - 1 CGCGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGC-CAGAGAAAAGUGAGUAGCGCAAGUUUGCAGACUGGUAAAUACCUGGUAAAGUUCCAUUUUAGAUGACUUUUAUG .(((((..(((.((((.....)))))))..)))))..((-(((......(((.....)))..((((((......))))))..)))))(((((..((((...))))))))).... ( -25.70) >DroYak_CAF1 14509 114 - 1 CGCGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGCUCGGAAAAAAGUGACUAUCGCCAGGUUGCGGACUGGUAAAUACCUGGUGAAGUUACAUUUUAGGUGACUUUAAUG (((((...)))))..((((((.(..(((...)))..).)))))).....((((((.((((((((((((......)))...)))))))))))))))(((..((....))..))). ( -38.90) >consensus _GCGGUAUCUGCGGAUCUGGGGUCUCAGCAGCUGCAAGUUCAGCGAAAAGUAAGUAUCGCAAAUUUGUAGACUGGUGAGUACCUGGUAAAGUUACACUUUAGAAGAAUUUUAUG ..(((.(((....))))))((((((((.(((((((((((...(((............)))..)))))))).))).)))).)))).............................. (-23.36 = -23.72 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:13 2006