Locus 3341

Sequence ID 2R_DroMel_CAF1
Location 11,352,825 – 11,352,917
Length 92
Max. P 0.763290
window5465

overview

Window 5

Location 11,352,825 – 11,352,917
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 91.51
Mean single sequence MFE -28.82
Consensus MFE -24.63
Energy contribution -25.52
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -1.79
Structure conservation index 0.85
SVM decision value 0.51
SVM RNA-class probability 0.763290
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11352825 92 - 20766785
UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUACGGCUAACAGCUAACAAAUCGGGAGCAGC
........--((((((((((((((.((.....)).))).)))).(((...(((((..........)))))....)))........))).)))). ( -29.90)
>DroSec_CAF1 10896 92 - 1
UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAACACGGCUAACAGCUAACAAAUCGGGAGCAGC
........--((((((((((((((.((.....)).))).)))).(((...(((((..........)))))....)))........))).)))). ( -29.90)
>DroSim_CAF1 10853 92 - 1
UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUACGGCUAACAGCUAACAAAUCGGGAGCAGC
........--((((((((((((((.((.....)).))).)))).(((...(((((..........)))))....)))........))).)))). ( -29.90)
>DroEre_CAF1 13187 92 - 1
UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUACGGCUAACAGCUAACGAAUCGGGAACAGC
....((((--(((...))))))).((((((....(((.....)))((...(((((..........)))))....))........)))))).... ( -27.30)
>DroYak_CAF1 11152 92 - 1
UCUAGACU--CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUGCGGCUAACAGCUAACAAAUCGGGAGCAGC
........--((((((((((((((.((.....)).))).)))).(((...((((((........))))))....)))........))).)))). ( -33.90)
>DroAna_CAF1 11159 85 - 1
UCUAGACUAUCUGC-CCGGAGUCAAUUCCGCAGACUGACCUCCAGGCACGAGCCGCCCCAAAA--------AGAGCCCCUAAAUCGGGAGCAGC
.........(((((-(.(((((((.((.....)).))).)))).)))).))............--------...(((((......))).))... ( -22.00)
>consensus
UCUAGACU__CUGCCCCGGAGUCAUUCCCGCAGACUGACCUCCAGGCACGAGCCGCCCAGAAAUACGGCUAACAGCUAACAAAUCGGGAGCAGC
..........((((((((((((((.((.....)).))).)))).(((...(((((..........)))))....)))........))).)))). (-24.63 = -25.52 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:10 2006