Locus 3331

Sequence ID 2R_DroMel_CAF1
Location 11,338,802 – 11,338,916
Length 114
Max. P 0.917087
window5447

overview

Window 7

Location 11,338,802 – 11,338,916
Length 114
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 93.92
Mean single sequence MFE -37.44
Consensus MFE -29.00
Energy contribution -29.40
Covariance contribution 0.40
Combinations/Pair 1.08
Mean z-score -2.34
Structure conservation index 0.77
SVM decision value 1.11
SVM RNA-class probability 0.917087
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11338802 114 - 20766785
CGGGGGUUACUCUGAC---UCCUCGCAAUAUCUGUUUGCUCUUCGGCCGCGGACCUGAAAUCUCGAAAUGCUCUUGGCCUGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC
((((((((.....)))---.))))).....((.((((((.(....)..))))))..))(((((((((((((..(((((..(......)..))))).)))))))))))))........ ( -38.50)
>DroSec_CAF1 126548 114 - 1
CGGGGGUUACUCUGAC---UCCUCGCAAUCUCUGUGUGCUCUUCGGUCGGGGACCUGAAAUCUCGAAAUGCUCUUGGCCUGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC
.((..(((.(((((((---(.(.((((.....)))).)......))))))))......(((((((((((((..(((((..(......)..))))).))))))))))))))))..)). ( -38.60)
>DroSim_CAF1 132282 114 - 1
CGGGGGUUACUCUGAC---UCCUCGCAAUCUCUGUUUGCUCUUCGGCCGGGCAUCUGAAAUCUCGAAAUGCUCUUGGCCUGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC
.(((((((.....)))---)))).(.((((((....(((((.......)))))...))(((((((((((((..(((((..(......)..))))).))))))))))))))))).).. ( -37.50)
>DroEre_CAF1 130452 116 - 1
CGGGGGUUACUCUGACUGCUCCUCGCAAUCUCUGUCUGCUCUUCGGCCG-GGACCUGAAAUCUCGAAAUGCUCUUGGCCCGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC
(((((((.((...((.(((.....))).))...))..)).)))))...(-(((.....(((((((((((((..(((((..(......)..))))).)))))))))))))....)))) ( -35.70)
>DroYak_CAF1 129607 112 - 1
CGG-GGUUACUUUGAC---UCCUCGCAAUCUCUGUCUUCUCUUGGGCCG-GGACCUGAAAUCUCGAAAUGCUCUUGGCCCGGCUUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC
.((-((((.....)))---)))(((...((((.((((......)))).)-)))..)))(((((((((((((..(((((..(......)..))))).)))))))))))))........ ( -36.90)
>consensus
CGGGGGUUACUCUGAC___UCCUCGCAAUCUCUGUCUGCUCUUCGGCCG_GGACCUGAAAUCUCGAAAUGCUCUUGGCCUGGCCUCACUUGUCAACGCAUUUCGAGAUUGAUUUCUC
(((((....)))))..........(.((((((.((((.(.(....)..).))))..))(((((((((((((..(((((..(......)..))))).))))))))))))))))).).. (-29.00 = -29.40 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:52 2006