Locus 333

Sequence ID 2R_DroMel_CAF1
Location 2,166,961 – 2,167,055
Length 94
Max. P 0.633680
window674

overview

Window 4

Location 2,166,961 – 2,167,055
Length 94
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 81.77
Mean single sequence MFE -22.18
Consensus MFE -16.36
Energy contribution -16.95
Covariance contribution 0.59
Combinations/Pair 1.10
Mean z-score -1.47
Structure conservation index 0.74
SVM decision value 0.21
SVM RNA-class probability 0.633680
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2166961 94 + 20766785
CUUUUUCUCUUCCUUUAUUGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUCACAGUUUUACA--
......................((..((((((.(((((((((.......)))))))))))).((...(((.....)))...))...)))..)).-- ( -20.40)
>DroSec_CAF1 1775 95 + 1
UUCUUUC-CUUCCCUUAUUGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACGGAUUGGCUUAAGUAGCAGUUCACAGUUUUGCACC
.......-..........(((((.(((.((((.(((((((((.......)))))))))))))((...(((.....)))...)).)))..))))).. ( -24.00)
>DroSim_CAF1 1775 95 + 1
UUAUUUC-CUUCCCUUAUUGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUCACAGUUUUACACC
.......-..............((..((((((.(((((((((.......)))))))))))).((...(((.....)))...))...)))..))... ( -20.40)
>DroEre_CAF1 1791 96 + 1
UAUUUUCUUUCCUUUUAUGGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUUACACUUUUACUAA
..................(.(((((((.....((((((((((.......)))))))))).))))))).)...(((((.(((....))).))))).. ( -22.70)
>DroYak_CAF1 1788 94 + 1
UUUAUUU--UUUUUGUAUUCCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUUAAAGUUUUACACC
.......--....((((...(((((((.....((((((((((.......)))))))))).)))))))(((.....)))............)))).. ( -21.10)
>DroPer_CAF1 19072 93 + 1
CAACUUAUCUCCC---CUCUCAGUUCGAUGUGGAUAACUUCCACAGCAAGGAAAUCAUCAGUGAUUGGCUGAAAUAGGAGCACAUAGGUUUACUCU
.(((((((((((.---...((((((.(.((((((.....)))))).).....(((((....)))))))))))....))))...)))))))...... ( -24.50)
>consensus
UUUUUUC_CUUCCUUUAUUGCAGUUUGACGUGGAUAACUUCCACAGCGAGGAAGUUAUUACAGAUUGGCUUAAGUAGCAGUUCACAGUUUUACACC
....................(((((((.....((((((((((.......)))))))))).)))))))(((.....))).................. (-16.36 = -16.95 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:47 2006