| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,336,387 – 11,336,507 |
| Length | 120 |
| Max. P | 0.662874 |
| Location | 11,336,387 – 11,336,507 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.22 |
| Mean single sequence MFE | -23.04 |
| Consensus MFE | -13.57 |
| Energy contribution | -15.57 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11336387 120 - 20766785 UUUUGUCAAUCAUGGACAUGUCCGAGCUAUCGGACUGUAGCAAAUUUCACUGGUUCCAAACCAUAAACUACAUUUGUAAAAAUACUGUAUCCUAAUCUAAUCUACAUGGAUUUUACAAUU (((((.(((...((((((.((((((....)))))))))............((((.....))))....)))...))))))))....((((....((((((.......)))))).))))... ( -21.60) >DroSec_CAF1 124169 120 - 1 UUUUGUCAAUCAUGGACAUGUCCGAGCUAUCGGAGUGUGGCAAAUUUCACUGGUUCCAAACUAUAAGCCACAUUUGUAAAAAUACUGUAUACUAAUCAUACCUACAUGUAUUUUACAAAU ...((((.......))))..(((((....)))))(((((((.........((....))........)))))))((((((((.(((((((.............)))).))))))))))).. ( -26.45) >DroSim_CAF1 129859 120 - 1 UUUUGUCAAUCACGGACAAGUCCGAGCUAUCGGAGUGUAGCAAAUUUUACUGGUUCCAAACUAUAAACUACAUUUGUAAAAAUACUGUAUACAAAUUACAUCUACAUGUAUUUUACAAAU .((((((.......))))))(((((....)))))((((((.....((((.((((.....))))))))))))))((((((((.(((((((.............)))).))))))))))).. ( -23.32) >DroYak_CAF1 126786 107 - 1 UUUUGCC---CAUGGACAUGUCCAUGCCAUCGG----------AUUUCACUGGUUCCGAAACAUAAACUACAUAUGUAAAAAUACUGUGUAUACAUCAUAAAUACAUGUACUUUACAAUU .......---((((((....))))))...((((----------(..........)))))...............((((((..(((.((((((.........))))))))).))))))... ( -20.80) >consensus UUUUGUCAAUCAUGGACAUGUCCGAGCUAUCGGAGUGUAGCAAAUUUCACUGGUUCCAAACCAUAAACUACAUUUGUAAAAAUACUGUAUACAAAUCAUAUCUACAUGUAUUUUACAAAU .((((........(((....)))((((((..(((((.......)))))..))))))))))...........((((((((((.(((((((.............)))).))))))))))))) (-13.57 = -15.57 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:50 2006