Locus 3328

Sequence ID 2R_DroMel_CAF1
Location 11,333,199 – 11,333,308
Length 109
Max. P 0.926278
window5443

overview

Window 3

Location 11,333,199 – 11,333,308
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.01
Mean single sequence MFE -25.89
Consensus MFE -7.46
Energy contribution -7.90
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -2.11
Structure conservation index 0.29
SVM decision value 1.17
SVM RNA-class probability 0.926278
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11333199 109 + 20766785
GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCAUGGGAAUAAGCCGCAAAAGACAUGAAAAUGUGUGUUGU-UGCUUAAG-----UACACGGUACUUU-----GUGUGCCAAAA
((((...........))))((...............)).......(((((.((((.(.((((....)))).).))))-.))))).(-----(((((((....))-----))))))..... ( -25.66)
>DroSec_CAF1 120573 114 + 1
GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGGAAUAAGCCGCAAAAGACAUGAAAAUGUGUAUUGU-UGCUUAAGGGUAGUACCCGUUAUUUU-----GUGUGCCAAAA
..............((.((((..((((((....(((((((.....(((((.((((.(.((((....)))).).))))-.))))).))))))).....)))))).-----..))))))... ( -29.90)
>DroSim_CAF1 124689 109 + 1
GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGGAAUAAGCCGCAAAAGACAUGAAAAUGUGUAUUGU-UGCUUAAGGGUAGUAC-----ACUUU-----GUGUGCCAAAA
..............((.((((....((((((..(((((((.....(((((.((((.(.((((....)))).).))))-.))))).)))))))..-----.))))-----))))))))... ( -28.80)
>DroEre_CAF1 121809 82 + 1
GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGAAAUAGGCCGCAAAAGACAC--AAUUGUCUU------------------------------------GAGUGGCAAAU
((((...........))))((...............(((((....)))))(((..((((((.--...))))))------------------------------------..))))).... ( -19.40)
>DroYak_CAF1 123394 113 + 1
GGUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGGAAUAGCCCGCAAAAGACAUUAAAUUGUGUGCUCUUUUGUUAAGGAUAGUA-------GUACGUGGGCAUUGCCAAAU
(((......((((.(((....)))..))))......)))(((.(((.((((((.....(((......)))(((((((.((......)).)).)-------))))))))))))).)))... ( -25.70)
>consensus
GCUUUACAAUUUAAUGAGCGCUUAAAUAAAGAAAUUGCCUGGGAAUAAGCCGCAAAAGACAUGAAAAUGUGUAUUGU_UGCUUAAGG_UAGUAC_____ACUUU_____GUGUGCCAAAA
..............((.((((.............((((..((.......))))))...((((......)))).......................................))))))... ( -7.46 =  -7.90 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:49 2006