Locus 3327

Sequence ID 2R_DroMel_CAF1
Location 11,332,666 – 11,332,764
Length 98
Max. P 0.719979
window5442

overview

Window 2

Location 11,332,666 – 11,332,764
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 86.85
Mean single sequence MFE -22.27
Consensus MFE -18.96
Energy contribution -19.63
Covariance contribution 0.67
Combinations/Pair 1.08
Mean z-score -1.87
Structure conservation index 0.85
SVM decision value 0.40
SVM RNA-class probability 0.719979
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11332666 98 - 20766785
UUCUUUUAUUUUUUUUUUUUGGGAGGAACUGCAUUUGCUGAAUUGUUGCCCUCACAAAGAGUUUUUGCGGUUUGCCAAGAAAGUUACCAGUUUUAGAU
.(((...(((...(((((((((...((((((((...(((...((((.......))))..)))...)))))))).))))))))).....)))...))). ( -19.70)
>DroSec_CAF1 120032 93 - 1
UUCUUU-----UUUUUUUUUGGGAGGAACUGCAUUUGCUGAAUUGUUGCCCUCACAUAGGGUUUUUGCGAUUUGGUAAGAAAGUUGCCAGUUUUUGAU
......-----............(((((((((((((((..((((((.(((((.....)))))....))))))..))))).....)).))))))))... ( -25.00)
>DroSim_CAF1 124152 89 - 1
UUCUUU-----U----UUUUGGGAGGAACUGCAUUUGCUGAAAUGUUGCCCUUACAUAGGGUUUUUGCGAUUUGGUAAGAGAGUUGCCAGUUUUUGAU
.((((.-----.----....))))((((((.(.(((((..((.(((.(((((.....)))))....))).))..))))).))))).)).......... ( -22.10)
>consensus
UUCUUU_____UUUUUUUUUGGGAGGAACUGCAUUUGCUGAAUUGUUGCCCUCACAUAGGGUUUUUGCGAUUUGGUAAGAAAGUUGCCAGUUUUUGAU
........................((((((...(((((((((((((.(((((.....)))))....)))))))))))))..)))).)).......... (-18.96 = -19.63 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:47 2006