Locus 3324

Sequence ID 2R_DroMel_CAF1
Location 11,324,249 – 11,324,340
Length 91
Max. P 0.853624
window5437

overview

Window 7

Location 11,324,249 – 11,324,340
Length 91
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 84.81
Mean single sequence MFE -23.92
Consensus MFE -18.28
Energy contribution -18.92
Covariance contribution 0.64
Combinations/Pair 1.14
Mean z-score -2.97
Structure conservation index 0.76
SVM decision value 0.80
SVM RNA-class probability 0.853624
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11324249 91 - 20766785
---------------CAGG--GUAUGCUGUGCGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUUUAAAUUUAUGCAACUACAGGCAAAUAUUUGAAAUU-GCCAAU
---------------...(--(((.((...))(((((((..(((((((((((.(((.......))).))))))).))))..))))))).............)-)))... ( -19.20)
>DroSec_CAF1 111687 91 - 1
---------------CAGG--GUAUGCUGUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACAGGCAAAUAUUUGAAAUU-GCCAAU
---------------...(--(((..((((.((((((((..(((((((((((((((.......))))))))))).))))..)))))))).)))...)....)-)))... ( -25.30)
>DroSim_CAF1 115520 91 - 1
---------------CAGG--GUAUGCUGUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACAGGCAAAUAUUUGAAAUU-GCCAAU
---------------...(--(((..((((.((((((((..(((((((((((((((.......))))))))))).))))..)))))))).)))...)....)-)))... ( -25.30)
>DroEre_CAF1 112883 91 - 1
---------------CAGG--GUAUGCUAUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACGGACAAAUAUUUGAAAUU-GCCAAU
---------------...(--(((..((((.((((((((..(((((((((((((((.......))))))))))).))))..)))))))).)))...)....)-)))... ( -25.00)
>DroYak_CAF1 114376 91 - 1
---------------CAGG--GUAUGCAAUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACGGACAAAUAUUGGAAAUU-GCCAAU
---------------...(--((((.(((((((((((((..(((((((((((((((.......))))))))))).))))..))))))))..))))).)...)-)))... ( -28.00)
>DroAna_CAF1 104978 107 - 1
AACAGAUACAUAAGCGAGCACAUAUGUACUGCGC--CCAGCUGCAGAAUCUACAUAUUUUAUUUGUGGAAAUUUAUGCAAUUACUGGCAAAUAUUUGAACUCGGCCAAU
..(((.((((((.(......).))))))))).((--(.((...((((.((((((.........))))))......(((........)))....))))..)).))).... ( -20.70)
>consensus
_______________CAGG__GUAUGCUGUGUGUUUGUAUCUGCAGAAUUUACAUAUUUUAUUUGUGUAAAUUUAUGCAACUACAGGCAAAUAUUUGAAAUU_GCCAAU
................................(((((((..(((((((((((((((.......))))))))))).))))..)))))))..................... (-18.28 = -18.92 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:43 2006