| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,322,530 – 11,322,641 |
| Length | 111 |
| Max. P | 0.745475 |
| Location | 11,322,530 – 11,322,641 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.33 |
| Mean single sequence MFE | -21.73 |
| Consensus MFE | -14.81 |
| Energy contribution | -14.40 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11322530 111 - 20766785 GUUAGAGAGCGG-GGAGCCACGAAAAGAAAAAAAUAAA-GACGAAAAAACGUUG-AGCAGUUUGAAGUGUACGUGAAAUUUGCAUAAAUGCGAAAUCAACGCGUUCACUACUUG .(((((..((((-....))...................-((((......)))).-.))..)))))((((.(((((...((((((....)))))).....))))).))))..... ( -22.90) >DroGri_CAF1 90599 88 - 1 GUUGGCGAGCGC-----------AAAAA---------------AAAAAAGGCAGCCGCAGUUUGAAGUGUACGUGAAAUUUGCAUAAAUGCGAAAUCAACGCGUUCGCUACUUG ..((((((((((-----------.....---------------..(((..((....))..))).........((....((((((....))))))....)))))))))))).... ( -25.00) >DroEre_CAF1 111190 110 - 1 GUUUGAGAGCGGGGGAGCCAGAAAAAGAA--AAAUAAA-GACGAAAAAACGUUG-AGCAGUUUGAAGUGUACGUGAAAUUUGCAUAAAUGCGAAAUCAACGCGUUCACUACUUG ....(((.((.((....))..........--.......-((((......)))).-.)).......((((.(((((...((((((....)))))).....))))).)))).))). ( -21.90) >DroWil_CAF1 173963 91 - 1 GUCAGUCAGAAG----------------------GGAA-GGCAAAAAAACGCAGCAGCAGUUUGAAGUGUACGUGAAAUUUGCAUAAAUGCGAAAUCAACGCGUUCGCUACUUG .......((.((----------------------.(((-.((......((((..(((....)))..))))..((....((((((....))))))....)))).))).)).)).. ( -18.70) >DroYak_CAF1 112644 112 - 1 GUUAGAGAGCGGGGGAGCCACGAAAAGAAAAAAAUAAA-GAUGAAAAAACGUUG-AGCAGUUUGAAGUGUACGUGAAAUUUGCAUAAAUGCGAAAUCAACGCGUUCACUACUUG ..(((.(((((((....))...................-..........(((((-((((.(....).)))........((((((....)))))).))))))))))).))).... ( -21.80) >DroAna_CAF1 104082 95 - 1 GC------------GAGCU------AGAAAAAAAUAAACGAGCAAAAAGCGUUG-AGCAGUUUGAAGUGUACGUGAAAUUUGCAUAAAUGCGAAAUCAACGCGUUCACUACUUG ..------------.....------.............((((((((..((....-.))..)))).((((.(((((...((((((....)))))).....))))).)))).)))) ( -20.10) >consensus GUUAGAGAGCGG__GAGCC____AAAGAA__AAAUAAA_GACGAAAAAACGUUG_AGCAGUUUGAAGUGUACGUGAAAUUUGCAUAAAUGCGAAAUCAACGCGUUCACUACUUG ..............................................((((((....)).))))..((((.(((((...((((((....)))))).....))))).))))..... (-14.81 = -14.40 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:40 2006