| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,309,385 – 11,309,495 |
| Length | 110 |
| Max. P | 0.553841 |
| Location | 11,309,385 – 11,309,495 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.33 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -13.71 |
| Energy contribution | -12.85 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11309385 110 - 20766785 UUAACUUUU-CCCCCAGCAUCGAUUGCCACGUGAUGCCUGCUCCCCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCACGUUUCAUGUUCGCAAAUAU .........-..........(((.((..((((((....(((......(((((((.....))))))).....(((....))))))....))))))..))...)))....... ( -20.80) >DroSec_CAF1 96612 110 - 1 UUAACUUUU-UCACCAGCAUCGAUUGCCACGCGAUGCCUGCUCCCCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCACGUUUCAUGUUCGCAAAUAU .........-......((((((.........)))))).(((......(((((((.....)))))))..((((((....))).)))..................)))..... ( -18.90) >DroSim_CAF1 100329 110 - 1 UUAACUUUU-CCACCAGCAUCGAUUGCCACGCGAUGCAUGCUCCCCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCACGUUUCAUGUUCGCAAAUAU .........-......(((.....)))...((((.(((((.......(((((((.....)))))))..((((((....))).)))...........)))))))))...... ( -21.50) >DroEre_CAF1 97918 110 - 1 UUAACUUUU-CCACCAGCAUCGAUUGCCCUGCGAUGCCUGCUCACCCCAUCGAUAAAUAAUCGAUGGCUUGACUAAUUAGUGCAAUUCUCGCGUUUCAUGUUGGCAAAUAU .........-...(((((((.((..((...((((((((((.(((..((((((((.....))))))))..))).....))).)))....)))))).)))))))))....... ( -28.80) >DroYak_CAF1 99043 110 - 1 UUAACUUUU-CCACCAGCAUCGAUUGCCACGCGAUGCCUGCUCACCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCGCGUUUCAUGUUGGCAAAUAU .........-...(((((((.((.....((((((....(((......(((((((.....))))))).....(((....))))))....)))))).)))))))))....... ( -28.10) >DroAna_CAF1 89615 88 - 1 -AAUCUUUUAUGAAAACUAUCGAUUGCCAUGUUCUG-----------CAGCGAUAACUAUUCGA--AAUCGAGUGAUGGGGG-----UUCCCCUUU----UUGGGAAACCU -...............(((((.(((((..((.....-----------)))))))....(((((.--...))))))))))(((-----((.(((...----..))).))))) ( -22.70) >consensus UUAACUUUU_CCACCAGCAUCGAUUGCCACGCGAUGCCUGCUCCCCCCAUCGAUAAAUAAUCGAUGACUUGACUAAUUAGUGCAAUUUUCACGUUUCAUGUUCGCAAAUAU ................((((((((((.....(((((...........))))).....))))))))..............(((.......)))...........))...... (-13.71 = -12.85 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:39 2006