Locus 3320

Sequence ID 2R_DroMel_CAF1
Location 11,306,934 – 11,307,046
Length 112
Max. P 0.620128
window5433

overview

Window 3

Location 11,306,934 – 11,307,046
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 96.70
Mean single sequence MFE -24.58
Consensus MFE -22.68
Energy contribution -22.88
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 0.92
SVM decision value 0.18
SVM RNA-class probability 0.620128
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11306934 112 - 20766785
UUCCCAAAGCCUUCCAUCCGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUACUG
.......((..((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))..)). ( -24.80)
>DroSec_CAF1 94170 112 - 1
UUCCGAAAGCCUUCCAUCUGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUACUG
.......((..((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))..)). ( -25.70)
>DroSim_CAF1 97885 112 - 1
UUCCGAAAGCCUUCCAUCCGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUACAG
...(....)..((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))..... ( -24.30)
>DroEre_CAF1 95392 112 - 1
UUCAGAAAUCCUUCCAUCCGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUUCUG
..(((((....((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))))))) ( -26.80)
>DroYak_CAF1 96467 112 - 1
UUCAGAAAGCCUUCCAUCCGGAAACCUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGCCGAAAGCGUAAUAGAAACUAAUGGAAUCCUG
.......((..((((((..((((((..(((.((((((((....((((........)))))))))))).)))..))))).(((....).))........)..))))))..)). ( -21.30)
>consensus
UUCCGAAAGCCUUCCAUCCGGAAACUUGUGCAUUUAAUAUGAAAAGCCUUUAAAAGUUUUAUUGAGUACGCUUGUUUCAGGCGAAAGCGUAAUAGAAACUAAUGGAAUACUG
...........((((((..((((((..(((.((((((((....((((........)))))))))))).)))..)))))..((....))..........)..))))))..... (-22.68 = -22.88 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:38 2006