Locus 332

Sequence ID 2R_DroMel_CAF1
Location 2,152,371 – 2,152,474
Length 103
Max. P 0.540021
window673

overview

Window 3

Location 2,152,371 – 2,152,474
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 84.14
Mean single sequence MFE -42.19
Consensus MFE -30.57
Energy contribution -30.72
Covariance contribution 0.15
Combinations/Pair 1.45
Mean z-score -1.85
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.540021
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2152371 103 - 20766785
GGAGCUGAGGAAUGGGCAAUGAAGCGCCCGGCUUUGCGGCAACUAAUCGCUGCUGGGGUGCUAAUUGCGGCGAAACGAGCUGCGGCUGUGGUUGGGGCUGAUG
...(((.(....).))).....(((.(((((((..((.(((.((..(((((((.............)))))))....)).))).))...)))))))))).... ( -38.62)
>DroSec_CAF1 3842 103 - 1
GGAGCUGCGGAAUGGGCAAUGAAGCGCCCGGCUUAGCGGCAACUAAUCGCUGCUGGGGUGCUAAUUGCGGCGAAACGAGCUGCGCCUGGGGUUGUGGCUGGUG
..(((..(((..(((((.....(((((((....(((((((........))))))))))))))....(((((.......))))))))))...)))..))).... ( -46.80)
>DroSim_CAF1 3808 103 - 1
GGAGCUGCGGAAUGGGCAAUGAAGCGCCCGGCUUAGCGGCAACUAAUCGCUGCUGGGGUGCUAAUUGCGGCGAAACGAGCUGCGGCUGGGGCUGUGGCUGGUG
...(((((((..(((((........))))).(((((((((........))))))))).......)))))))...((.(((..((((....))))..))).)). ( -48.10)
>DroEre_CAF1 4034 103 - 1
GGAGCUGAGGAAUGGGCAAUGAAGCGCCCUGUUUAGUGGCAACCAAUCGCUGUUGGGGUGCUAACUGCGGCGAAACGAGCUGCGGCUGUGGUUGUGGCUGGUG
((.((((..((((((((........)))).))))..))))..))..(((((((...(((....)))))))))).((.(((..((((....))))..))).)). ( -39.20)
>DroYak_CAF1 4075 97 - 1
GGAGCUGGGGAAUGGGCAAUGAAGCGCCCGGUUUGGUGGCAACUAAUCGCUGCUGGGGUGCCAAUUGUGGCGAAACGAGCUGCGGCUGGGGUU------GGUG
...((((..((((((((........)))).))))..)))).(((((((.(.((((.(((((((....)))).......))).)))).).))))------))). ( -34.61)
>DroAna_CAF1 3869 103 - 1
GCAACUGGGGAAUGGGUAGGGAUGUGCCCGUUUUUGUGGCCACAAGGCGUUGUUGCGGCAACACCUGCGGCGAGACUAGUUGCGGCUGUGGUUGCGGCUGGUG
((((((((((((((((((......))))))))))....(((.((.((.(((((....))))).)))).)))....))))))))((((((....)))))).... ( -45.80)
>consensus
GGAGCUGAGGAAUGGGCAAUGAAGCGCCCGGCUUAGCGGCAACUAAUCGCUGCUGGGGUGCUAAUUGCGGCGAAACGAGCUGCGGCUGGGGUUGUGGCUGGUG
...............(((((...((((((....(((((((........)))))))))))))..)))))......((.(((((((((....))))))))).)). (-30.57 = -30.72 +   0.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:46 2006