Locus 3319

Sequence ID	2R_DroMel_CAF1
Location	11,305,582 – 11,305,674
Length	92
Max. P	0.563704

overview

Window 2

Location	11,305,582 – 11,305,674
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	91.50
Mean single sequence MFE	-30.74
Consensus MFE	-25.66
Energy contribution	-26.02
Covariance contribution	0.36
Combinations/Pair	1.04
Mean z-score	-1.30
Structure conservation index	0.83
SVM decision value	0.06
SVM RNA-class probability	0.563704
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11305582 92 - 20766785
CAUGCCUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCACCAUCGCCGGGAAA-UUGGGCGAGUUGCUGC
........(((...((((.(((((((((((.(((.((...((((((......))))))...))))).)))))....-.)))))).)))).))) ( -31.30)
>DroSec_CAF1 92816 92 - 1
CAUGCCUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCACCAUCGCCGGGAAA-UUGGGCGAGUUGCUGC
........(((...((((.(((((((((((.(((.((...((((((......))))))...))))).)))))....-.)))))).)))).))) ( -31.30)
>DroSim_CAF1 96497 92 - 1
CAUGCCUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCACCAUCGCCGGGAAA-UUGGGCGAGUUGCUGC
........(((...((((.(((((((((((.(((.((...((((((......))))))...))))).)))))....-.)))))).)))).))) ( -31.30)
>DroEre_CAF1 94025 86 - 1
CACGCUUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCAC---CGCCGGAAAA-UUGGGCGAGA---UGC
........((((((((...((....(((((.(((.((...((((((......)))))))))))---.)))))....-.))..)))))---))) ( -30.40)
>DroYak_CAF1 95152 87 - 1
CACGCUUCGCAUUUCGACACGUCCAUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCAA---CGCGGGGAAAUUUGGUCGAGA---UGC
........((((((((((..(((....)))..(((((...((((((......))))))....)---))))..........)))))))---))) ( -29.40)
>consensus
CAUGCCUCGCAUUUCGACACGUCCGUCGGCAGUGCGUAAACAAUGGCCCAAACCAUUGGCCACCAUCGCCGGGAAA_UUGGGCGAGUUGCUGC
.....(((((((((((((......))))).)))))..........((((((....(((((.......))))).....)))))))))....... (-25.66 = -26.02 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:37 2006