Locus 3316

Sequence ID 2R_DroMel_CAF1
Location 11,299,605 – 11,299,707
Length 102
Max. P 0.683590
window5426

overview

Window 6

Location 11,299,605 – 11,299,707
Length 102
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 79.91
Mean single sequence MFE -19.25
Consensus MFE -12.68
Energy contribution -12.57
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -1.52
Structure conservation index 0.66
SVM decision value 0.31
SVM RNA-class probability 0.683590
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11299605 102 + 20766785
GUAUGUGUGUG--AGCAUAAAUAUUUCAUUGGCGCACUCACCAA---GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAAAACGGCGAAUCUCCCCCC
((..(((.(((--.((...(((.....))).)).))).)))...---))((((......(((((((((.....)))))))))(((.......)))...))))..... ( -22.30)
>DroVir_CAF1 81118 95 + 1
-----UGGUUGACUGCAUAAAUAUUUCAUUGGCAUGUUCGCCAA---GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCUAAAAA-UGUGGCG---CCCCAA
-----.((.((.(..(((.....((((.(((((......)))))---..))))......(((((((((.....))))))))).......)-))..)))---.))... ( -22.00)
>DroPse_CAF1 93592 95 + 1
------GUGUG--GGCAUAAAUAUUUCAUUGGCGCACUCACCAAAGCGAGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAA-AUAUCGAU---UCCCCC
------....(--((.((..((((((..(((((...(((........))).........(((((((((.....))))))))))))))))-))))..))---.))).. ( -21.90)
>DroEre_CAF1 87905 95 + 1
------GUGUG--AGCAUAAAUAUUUCAUUGGCGCACUCACCAA---GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAAAACGACGAACCCCCC-CC
------(((..--..)))..........(((((...(((.....---..))).......(((((((((.....)))))))))))))).................-.. ( -14.90)
>DroAna_CAF1 80434 78 + 1
------GUAUG--UGCAUAAAUAUUUCAUUGCCGUACUCACCAA---GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAA------------------
------(((((--.(((............)))))))).......---((.((....)).(((((((((.....))))))))))).....------------------ ( -12.50)
>DroPer_CAF1 92875 95 + 1
------GUGUG--GGCAUAAAUAUUUCAUUGGCGCACUCACCAAAGCGAGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAA-AUAUCGAU---UCCCCC
------....(--((.((..((((((..(((((...(((........))).........(((((((((.....))))))))))))))))-))))..))---.))).. ( -21.90)
>consensus
______GUGUG__AGCAUAAAUAUUUCAUUGGCGCACUCACCAA___GCGAGACACCUAAAUUUUGUAAUAUUUACAAAGUUGCCAAAA_AUGUCGAA___CCCCCC
............................(((((...(((.(......).))).......(((((((((.....)))))))))))))).................... (-12.68 = -12.57 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:32 2006