Locus 3314

Sequence ID 2R_DroMel_CAF1
Location 11,296,621 – 11,296,724
Length 103
Max. P 0.691496
window5423

overview

Window 3

Location 11,296,621 – 11,296,724
Length 103
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 88.17
Mean single sequence MFE -36.65
Consensus MFE -33.73
Energy contribution -33.70
Covariance contribution -0.03
Combinations/Pair 1.08
Mean z-score -1.32
Structure conservation index 0.92
SVM decision value 0.33
SVM RNA-class probability 0.691496
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11296621 103 - 20766785
UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUCUCGGCCCAGGCGGAGGUUUUGGCUGGCGGUGUGCUCGGGUAAGUUUUUCCGG--------------
....((((((((((..(........((((((....))))))(....)..((((.((....)).))))..)..))))).)))))...((((........)))).-------------- ( -36.40)
>DroVir_CAF1 78367 103 - 1
UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUCUCCGCCCAGGCGGAGGUUUUGGCUGGCGGUGUGCUCGGGUAAGUUAUUCAAC--------------
....((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).)))))....(((((...)))))...-------------- ( -37.10)
>DroPse_CAF1 90620 117 - 1
UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUUUCGGCCCAGGCGGAGGUAUUGGCUGGCGGUGUGCUCGGGUAAGUUUUCCCCUACUUUUCGUUCCGU
....((((((((((..(........((((((....))))))(....)(((((((.(....)))))))).)..))))).)))))...((((.((((........)))).....)))). ( -35.90)
>DroGri_CAF1 62524 103 - 1
UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUCUCCGCCCAGGCGGAGGUUUUGGCUGGCGGUGUUCUCGGGUAAGUUAUUCAAU--------------
...(((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).))))))...(((((...)))))...-------------- ( -37.40)
>DroWil_CAF1 140579 102 - 1
UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCCAUUGCGGAAACACUUUCCGCCCAGGCGGAGGUUUUGGCUGGCGGUGUGCUUGGGUAAGUGUGUGUG---------------
((((((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).)))))((((....)))).))))..--------------- ( -38.00)
>DroMoj_CAF1 71302 103 - 1
UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACCCUCUCCGCUCAGGCGGAGGUUUUGGCUGGCGGUGUUCUAGGGUAAGUAAUUCAAC--------------
...(((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).))))))...((((.....))))...-------------- ( -35.10)
>consensus
UACAACACCCCGGUUGGCAUUUACAGCGAUGAAUCUAUUGCGGAAACACUCUCCGCCCAGGCGGAGGUUUUGGCUGGCGGUGUGCUCGGGUAAGUUAUUCAAC______________
....((((((((((..(........((((((....))))))(....)..(((((((....)))))))..)..))))).))))).................................. (-33.73 = -33.70 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:29 2006