Locus 3312

Sequence ID 2R_DroMel_CAF1
Location 11,295,750 – 11,295,845
Length 95
Max. P 0.535337
window5418

overview

Window 8

Location 11,295,750 – 11,295,845
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.29
Mean single sequence MFE -35.43
Consensus MFE -22.00
Energy contribution -22.70
Covariance contribution 0.70
Combinations/Pair 1.29
Mean z-score -1.62
Structure conservation index 0.62
SVM decision value 0.00
SVM RNA-class probability 0.535337
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11295750 95 + 20766785
-------CCCCCCUGCUAAUCGCCCAGCGCAUCGCUCACGAACGGAUUGGCACCGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU
-------..((((((((..(((.((((((...))))...((((((...(....).)))))).)).)))..)))))).))((((((.....))))))...... ( -37.40)
>DroVir_CAF1 77306 102 + 1
ACAAGUUCGCCCAAAUUAAUCGGCGAGAGUGUCGCUCACAAACGGAUUGGCGCCCUCGUUUAGUAGCAGGAGCAAACGAGCCAGUUCAUAGUUGGCUGCAUU
(((..((((((..........))))))..))).((...(((..(((((((((((((.(((....)))))).))......))))))))....)))...))... ( -29.80)
>DroSim_CAF1 86667 95 + 1
-------GCCCCCUGCUAAUCACCCCACACAUCGCUCACGAACGGAUUGGCACCGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU
-------..((((((((..(((.((...((.(((....)))((((.......)))).))...)).)))..)))))).))((((((.....))))))...... ( -33.10)
>DroEre_CAF1 84099 94 + 1
-------C-CCCCUGCUAAUCGCCCAGCACAUCGCUCACGAGCGGAUUGGCACCGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU
-------.-((((((((..(((.(((((.....)))...((((((...(....).)))))).)).)))..)))))).))((((((.....))))))...... ( -36.60)
>DroYak_CAF1 84956 94 + 1
-------A-CCCCUGCUAAUCGCCCAGCACAUCGCUCACGAACGGAUUGGCACAGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU
-------.-((((((((..(((.(((((.....)))...(((((.((((...))))))))).)).)))..)))))).))((((((.....))))))...... ( -37.30)
>DroAna_CAF1 76989 99 + 1
-UAA--UCCUGCCCUCUAAUCGCCUAGUCCAUCGGACACGAACGGAUUGGCGCCAUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCGUAGUUGGCAUCUUU
-...--..(((((..((....(((.(((((.(((....)))..))))))))((((((......)))).))))..)))))((((((.....))))))...... ( -38.40)
>consensus
_______CCCCCCUGCUAAUCGCCCAGCACAUCGCUCACGAACGGAUUGGCACCGUCGUUCAGGAUGAGCAGCAGGCGGGCCAGCUCAUAGUUGGCGUCAUU
.........((((((((..(((((.........(....)((((((..((....)))))))).)).)))..)))))).))((((((.....))))))...... (-22.00 = -22.70 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:24 2006