Locus 3311

Sequence ID 2R_DroMel_CAF1
Location 11,289,982 – 11,290,076
Length 94
Max. P 0.824590
window5417

overview

Window 7

Location 11,289,982 – 11,290,076
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 90.25
Mean single sequence MFE -43.12
Consensus MFE -33.89
Energy contribution -34.08
Covariance contribution 0.20
Combinations/Pair 1.15
Mean z-score -3.01
Structure conservation index 0.79
SVM decision value 0.69
SVM RNA-class probability 0.824590
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11289982 94 - 20766785
UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCAUUGGCUGCUCCUGGCGCUGGCCAGGGUGAUAAUUACACCA
((((((..((....(((((((.((.((.(((((((((......)))))).)---))...)).))...)))))))..))..))))))........... ( -41.20)
>DroPse_CAF1 83546 97 - 1
UCGCCCAUGCACUCGCGCCAGACCUCGGGCUCGUCCACGUCGCUGGACGUGAGUGCGGUGGGUGGCAGUGGUGGUGUUCAGGCCGAUACUUACACAA
(((((((((((((((((((((.(..((((.....)).))..))))).))))))))).))))))))..(((..((((((......))))))..))).. ( -46.30)
>DroSec_CAF1 77196 94 - 1
UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCAUUGGCUGCUUCUGGCGCUGGCCAGGGUGAUAAUUACAUCA
((((((..((....((((((((((.((.(((((((((......)))))).)---))...)).))..))))))))..))..))))))........... ( -43.00)
>DroSim_CAF1 80867 94 - 1
UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCAUUGGCUGCUCCUGGCGCUGGCCAGGGUGAUAAUUACACCA
((((((..((....(((((((.((.((.(((((((((......)))))).)---))...)).))...)))))))..))..))))))........... ( -41.20)
>DroEre_CAF1 78491 94 - 1
UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCUUUGGCUGCUCCUGGCGCUGGCCAGGGCGAUAAUUACACCA
((((((..((....(((((((.((.((((((((((((......)))))).)---)))..)).))...)))))))..))..))))))........... ( -43.50)
>DroYak_CAF1 79171 94 - 1
UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG---GCUUUGGCUGCUCCUGGCGCUGGCCAGGGCGAUAAUUACACCA
((((((..((....(((((((.((.((((((((((((......)))))).)---)))..)).))...)))))))..))..))))))........... ( -43.50)
>consensus
UCGCCCCUGCACUCGCGCCAGACAUCCGGCUCCUCCACGUCACUGGAGGUG___GCAUUGGCUGCUCCUGGCGCUGGCCAGGGCGAUAAUUACACCA
((((((..((....(((((((.....(((((((((((......))))))..........)))))...)))))))..))..))))))........... (-33.89 = -34.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:23 2006