Locus 3310

Sequence ID 2R_DroMel_CAF1
Location 11,289,630 – 11,289,727
Length 97
Max. P 0.608754
window5416

overview

Window 6

Location 11,289,630 – 11,289,727
Length 97
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 83.16
Mean single sequence MFE -30.00
Consensus MFE -19.45
Energy contribution -22.57
Covariance contribution 3.12
Combinations/Pair 1.07
Mean z-score -1.74
Structure conservation index 0.65
SVM decision value 0.15
SVM RNA-class probability 0.608754
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11289630 97 + 20766785
UUAAAUUUCAAUUGAUUAGCAAGUGUCGCCGUUAGCGCUGCCACAAGCGGCUGUUGCUGG--UGUUGUUGGUGUGGCAGGUGUUGUUGGGGUGUGCUUG
...................((((..((.(((.(((((((((((((.(((((.........--.)))))...))))))).)))))).))).).)..)))) ( -32.10)
>DroGri_CAF1 54207 82 + 1
UUAAAUUUCAAUUGAUUAGCAAGGGUUGCCGUCAACGCUGCCACAUGGGGCUGCAGUUGCCCCGUAGUUGUUGUUGC---UGUUG--------------
................((((((((....))..(((((((((.....(((((.......))))))))).)))))))))---))...-------------- ( -23.70)
>DroSec_CAF1 76844 97 + 1
UUAAAUUUCAAUUGAUUAGCAAGUGUCGCCGUUAGCGCUGCCACAAGCGGCUGUUGCUGG--UGUUGUUGGUGUGGCAGGUGUUGUUGGGGUGUGCUUG
...................((((..((.(((.(((((((((((((.(((((.........--.)))))...))))))).)))))).))).).)..)))) ( -32.10)
>DroSim_CAF1 80515 97 + 1
UUAAAUUUCAAUUGAUUAGCAAGUGUCGCCGUUAGCGCUGCCACAAGCGGCUGUUGCUGG--UGUUGUUGGUGUGGCAGGUGUUGUUGGGGUGUGCUUG
...................((((..((.(((.(((((((((((((.(((((.........--.)))))...))))))).)))))).))).).)..)))) ( -32.10)
>consensus
UUAAAUUUCAAUUGAUUAGCAAGUGUCGCCGUUAGCGCUGCCACAAGCGGCUGUUGCUGG__UGUUGUUGGUGUGGCAGGUGUUGUUGGGGUGUGCUUG
...................(((((..(.(((.(((((((((((((.(((((............)))))...))))))).)))))).))).)...))))) (-19.45 = -22.57 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:22 2006